What is the context of the feature?
Generate a file of all proteins & protein complexes in the dataset.
Describe the solution
Call the Ensembl API to find lengths for each protein, then get the lengths of each complex, and sort the proteins/complexes shortest to longest. This will ensure that the shortest proteins are ran first through ColabFold, so they aren't stuck waiting behind longer sequences in the job queue.
JacksonH44
commented
2 months ago
What is the context of the feature? Generate a file of all proteins & protein complexes in the dataset.
Describe the solution Call the Ensembl API to find lengths for each protein, then get the lengths of each complex, and sort the proteins/complexes shortest to longest. This will ensure that the shortest proteins are ran first through ColabFold, so they aren't stuck waiting behind longer sequences in the job queue.