Closed ghost closed 3 years ago
Hi Oerient,
Welcome to PyAutoLens :).
The error implies that autolens is not installed in the enviroment that you are running autolens.
First, may I check that you created and activated a new conda enviroment, called 'autolens', using the following commands:
conda create -n autolens astropy numba numpy scikit-image scikit-learn scipy
conda activate autolens
You should see a (autolens) at the bottom left of your command line interface, where you then went on to run pip install autolens
and python welcome.py.
If you installed autolens, but then closed the termal, you will no longer be in the activated conda enviroment (the (autolens) will be missing) and you will need to reactivate the enviroment via conda activate autolens
.
If all of these checks seem to 'pass' let me know and we can dig deeper into what it is not working!
Wow thank you so much for such a quick response ! I'm sorry for the delay, I was teaching a class.
I re-did all you said, creating and activating autolens, I saw the (autolens) at the bottom left, I ran pip install autolens
and python welcome.py
, all without closing anything (just in case), and I still got the same error...
Orient
Can you copy and paste the output from running pip install autolens
.
Can you also paste the output of pip show autolens
.
Finally can you run:
python
import autolens
My feeling is that autolens has installed fine, but the command python
in the conda environment is calling a different Python interpreter to the one you installed.
` (base) C:\Users\dorey>conda activate autolens
(autolens) C:\Users\dorey>pip install autolens
Collecting autolens
Using cached autolens-1.14.0-py3-none-any.whl (174 kB)
Requirement already satisfied: matplotlib>=3.0.3 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autolens) (3.3.4)
Collecting autogalaxy==0.19.0
Using cached autogalaxy-0.19.0-py3-none-any.whl (294 kB)
Collecting autoarray==0.20.0
Using cached autoarray-0.20.0-py3-none-any.whl (379 kB)
Collecting pyprojroot==0.2.0
Using cached pyprojroot-0.2.0-py3-none-any.whl (5.2 kB)
Collecting autofit==0.74.0
Using cached autofit-0.74.0-py3-none-any.whl (1.6 MB)
Requirement already satisfied: numpy>=1.18.0 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autolens) (1.19.2)
Requirement already satisfied: astropy>=3.0.0 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autolens) (4.2)
Collecting numpydoc>=1.0.0
Using cached numpydoc-1.1.0-py3-none-any.whl (47 kB)
Collecting autoconf==0.8.0
Using cached autoconf-0.8.0-py3-none-any.whl (22 kB)
Requirement already satisfied: scipy>=1.5.1 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (1.6.2)
Requirement already satisfied: numba in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (0.53.1)
Collecting pynufft==2020.2.7
Using cached pynufft-2020.2.7-py3-none-any.whl (16.2 MB)
Requirement already satisfied: llvmlite in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (0.36.0)
Collecting pylops>=1.10.0
Using cached pylops-1.13.0-py3-none-any.whl (172 kB)
Requirement already satisfied: scikit-image>=0.14.2 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (0.17.2)
Collecting dill>=0.3.1.1
Using cached dill-0.3.3-py2.py3-none-any.whl (81 kB)
Requirement already satisfied: scikit-learn>=0.21.3 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (0.24.1)
Requirement already satisfied: decorator>=4.0.0 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autoarray==0.20.0->autolens) (4.4.2)
Collecting typing-inspect>=0.4.0
Using cached typing_inspect-0.6.0-py3-none-any.whl (8.1 kB)
Collecting h5py>=2.10.0
Using cached h5py-3.2.1-cp38-cp38-win_amd64.whl (2.8 MB)
Collecting SQLAlchemy==1.3.20
Using cached SQLAlchemy-1.3.20-cp38-cp38-win_amd64.whl (1.2 MB)
Collecting corner>=2.0.1
Using cached corner-2.2.1-py3-none-any.whl (15 kB)
Collecting scipy>=1.5.1
Using cached scipy-1.5.2-cp38-cp38-win_amd64.whl (31.4 MB)
Collecting dynesty==1.0.1
Using cached dynesty-1.0.1-py2.py3-none-any.whl (86 kB)
Collecting pyswarms==1.1.0
Using cached pyswarms-1.1.0-py2.py3-none-any.whl (96 kB)
Collecting emcee>=3.0.2
Using cached emcee-3.0.2-py2.py3-none-any.whl (41 kB)
Requirement already satisfied: PyYAML>=3.12 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from autofit==0.74.0->autolens) (5.4.1)
Collecting pyquad==0.6.2
Using cached pyquad-0.6.2.tar.gz (175 kB)
ERROR: Command errored out with exit status 1:
command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_cf80d6363e574946a9939175a041557b\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_cf80d6363e574946a9939175a041557b\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\dorey\AppData\Local\Temp\pip-pip-egg-info-do59h8pn'
cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_cf80d6363e574946a9939175a041557b\
Complete output (12 lines):
Traceback (most recent call last):
File "C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_cf80d6363e574946a9939175a041557b\setup.py", line 7, in
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_cf80d6363e574946a9939175a041557b\setup.py", line 9, in <module>
raise ImportError("Please install numpy and cython before building pyquad!")
ImportError: Please install numpy and cython before building pyquad!
----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/eb/af/78d1552f0293e597e5a3ba796fd84230fbbf6f199c5cf0d7ba7d442b23d0/pyquad-0.6.2.tar.gz#sha256=48854ff92b536c74988f5eb923020bea4cf435bb815ea322d048d51af6c29dd8 (from https://pypi.org/simple/pyquad/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
INFO: pip is looking at multiple versions of autofit to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autoconf to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autoarray to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autolens to determine which version is compatible with other requirements. This could take a while.
Collecting autolens
Using cached autolens-1.13.0-py3-none-any.whl (174 kB)
Using cached autolens-1.12.2-py3-none-any.whl (174 kB)
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Collecting autoarray==0.19.0
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Using cached autogalaxy-0.18.5-py3-none-any.whl (290 kB)
Collecting sqlalchemy>=1.3.23
Using cached SQLAlchemy-1.4.4-cp38-cp38-win_amd64.whl (1.5 MB)
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Collecting colorcet>=2.0.2
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Using cached numba-0.47.0-cp38-cp38-win_amd64.whl (2.1 MB)
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Collecting autogalaxy==0.18.1
Using cached autogalaxy-0.18.1-py3-none-any.whl (774 kB)
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Using cached autoarray-0.18.0-py3-none-any.whl (393 kB)
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Using cached autoconf-0.7.6-py3-none-any.whl (24 kB)
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Using cached autofit-0.73.0-py3-none-any.whl (1.9 MB)
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Using cached autogalaxy-0.18.0-py3-none-any.whl (774 kB)
Collecting autofit==0.71.5
Using cached autofit-0.71.5-py3-none-any.whl (1.9 MB)
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Using cached autoarray-0.17.0-py3-none-any.whl (396 kB)
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Using cached autogalaxy-0.17.1-py3-none-any.whl (771 kB)
Collecting autoconf==0.7.5
Using cached autoconf-0.7.5-py3-none-any.whl (24 kB)
INFO: pip is looking at multiple versions of autofit to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autoconf to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autoarray to determine which version is compatible with other requirements. This could take a while.
INFO: pip is looking at multiple versions of autolens to determine which version is compatible with other requirements. This could take a while.
Collecting autoconf==0.7.3
Using cached autoconf-0.7.3-py3-none-any.whl (24 kB)
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Using cached autogalaxy-0.16.8-py3-none-any.whl (933 kB)
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Using cached autogalaxy-0.16.7-py3-none-any.whl (969 kB)
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Collecting autogalaxy==0.16.6
Using cached autogalaxy-0.16.6-py3-none-any.whl (969 kB)
Collecting autoarray==0.16.2
Using cached autoarray-0.16.2-py3-none-any.whl (372 kB)
Collecting autoarray==0.16.1
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Collecting autogalaxy==0.16.5
Using cached autogalaxy-0.16.5-py3-none-any.whl (974 kB)
Collecting autofit==0.70.4
Using cached autofit-0.70.4-py3-none-any.whl (2.1 MB)
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking
Collecting autoarray==0.16.0
Using cached autoarray-0.16.0-py3-none-any.whl (372 kB)
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Using cached autogalaxy-0.16.4-py3-none-any.whl (974 kB)
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Using cached autofit-0.70.3-py3-none-any.whl (2.1 MB)
Collecting autoconf==0.7.2
Using cached autoconf-0.7.2-py3-none-any.whl (10 kB)
Collecting autofit==0.70.2
Using cached autofit-0.70.2-py3-none-any.whl (2.1 MB)
Collecting autogalaxy==0.16.3
Using cached autogalaxy-0.16.3-py3-none-any.whl (974 kB)
Collecting autoarray==0.15.3
Using cached autoarray-0.15.3-py3-none-any.whl (370 kB)
Collecting autogalaxy==0.16.2
Using cached autogalaxy-0.16.2-py3-none-any.whl (979 kB)
Collecting autofit==0.70.1
Using cached autofit-0.70.1-py3-none-any.whl (2.1 MB)
Collecting autoarray==0.15.2
Using cached autoarray-0.15.2-py3-none-any.whl (370 kB)
Collecting autofit==0.70.0
Using cached autofit-0.70.0-py3-none-any.whl (2.1 MB)
Collecting autogalaxy==0.16.0
Using cached autogalaxy-0.16.0-py3-none-any.whl (978 kB)
Collecting autoarray==0.15.0
Using cached autoarray-0.15.0-py3-none-any.whl (362 kB)
Collecting autoconf==0.7.0
Using cached autoconf-0.7.0-py3-none-any.whl (9.7 kB)
Collecting autogalaxy==0.15.8
Using cached autogalaxy-0.15.8-py3-none-any.whl (253 kB)
Collecting autofit==0.69.5
Using cached autofit-0.69.5-py3-none-any.whl (320 kB)
Collecting autoarray==0.14.13
Using cached autoarray-0.14.13-py3-none-any.whl (298 kB)
Collecting h5py==2.10.0
Using cached h5py-2.10.0-cp38-cp38-win_amd64.whl (2.5 MB)
Collecting autofit==0.69.4
Using cached autofit-0.69.4-py3-none-any.whl (319 kB)
Collecting autoarray==0.14.12
Using cached autoarray-0.14.12-py3-none-any.whl (297 kB)
Collecting autogalaxy==0.15.7
Using cached autogalaxy-0.15.7-py3-none-any.whl (259 kB)
Collecting autofit==0.69.3
Using cached autofit-0.69.3-py3-none-any.whl (318 kB)
Collecting autogalaxy==0.15.6
Using cached autogalaxy-0.15.6-py3-none-any.whl (259 kB)
Collecting autoarray==0.14.11
Using cached autoarray-0.14.11-py3-none-any.whl (297 kB)
Collecting autogalaxy==0.15.5
Using cached autogalaxy-0.15.5-py3-none-any.whl (259 kB)
Collecting autogalaxy==0.15.4
Using cached autogalaxy-0.15.4-py3-none-any.whl (259 kB)
Collecting autofit==0.69.2
Using cached autofit-0.69.2-py3-none-any.whl (318 kB)
Collecting autogalaxy==0.15.3
Using cached autogalaxy-0.15.3-py3-none-any.whl (259 kB)
Collecting autoarray==0.14.10
Using cached autoarray-0.14.10-py3-none-any.whl (294 kB)
Collecting autofit==0.69.0
Using cached autofit-0.69.0-py3-none-any.whl (303 kB)
Collecting autogalaxy==0.15.1
Using cached autogalaxy-0.15.1-py3-none-any.whl (246 kB)
Collecting pynufft>=2020.0.0
Using cached pynufft-2021.0.2-py3-none-any.whl (16.2 MB)
Collecting autogalaxy==0.15.0
Using cached autogalaxy-0.15.0-py3-none-any.whl (246 kB)
Collecting nbsphinx-link>=1.3.0
Using cached nbsphinx_link-1.3.0-py2.py3-none-any.whl (5.2 kB)
Collecting nbsphinx>=0.7.0
Using cached nbsphinx-0.8.2-py3-none-any.whl (24 kB)
Collecting autofit==0.68.0
Using cached autofit-0.68.0-py3-none-any.whl (300 kB)
Collecting autoarray==0.14.9
Using cached autoarray-0.14.9-py3-none-any.whl (283 kB)
Collecting autoconf==0.6.2
Using cached autoconf-0.6.2-py3-none-any.whl (11 kB)
Collecting autogalaxy==0.14.14
Using cached autogalaxy-0.14.14-py3-none-any.whl (244 kB)
Collecting autofit==0.67.7
Using cached autofit-0.67.7-py3-none-any.whl (269 kB)
Collecting autogalaxy==0.14.12
Using cached autogalaxy-0.14.12-py3-none-any.whl (244 kB)
Collecting autoarray==0.14.8
Using cached autoarray-0.14.8-py3-none-any.whl (282 kB)
Collecting autoarray==0.14.7
Using cached autoarray-0.14.7-py3-none-any.whl (280 kB)
Collecting autogalaxy==0.14.11
Using cached autogalaxy-0.14.11-py3-none-any.whl (244 kB)
Collecting autofit==0.67.6
Using cached autofit-0.67.6-py3-none-any.whl (269 kB)
Collecting autogalaxy==0.14.10
Using cached autogalaxy-0.14.10-py3-none-any.whl (242 kB)
Collecting autoarray==0.14.6
Using cached autoarray-0.14.6-py3-none-any.whl (280 kB)
Collecting autofit==0.67.3
Using cached autofit-0.67.3-py3-none-any.whl (269 kB)
Collecting autogalaxy==0.14.9
Using cached autogalaxy-0.14.9-py3-none-any.whl (245 kB)
Collecting autogalaxy==0.14.8
Using cached autogalaxy-0.14.8-py3-none-any.whl (245 kB)
Collecting autoarray==0.14.5
Using cached autoarray-0.14.5-py3-none-any.whl (279 kB)
Collecting autoarray==0.14.4
Using cached autoarray-0.14.4-py3-none-any.whl (279 kB)
Collecting autogalaxy==0.14.7
Using cached autogalaxy-0.14.7-py3-none-any.whl (245 kB)
Collecting llvmlite==0.31.0
Using cached llvmlite-0.31.0-cp38-cp38-win_amd64.whl (13.6 MB)
Collecting autogalaxy==0.14.6
Using cached autogalaxy-0.14.6-py3-none-any.whl (245 kB)
Collecting autoarray==0.14.3
Using cached autoarray-0.14.3-py3-none-any.whl (279 kB)
Collecting autogalaxy==0.14.5
Using cached autogalaxy-0.14.5-py3-none-any.whl (245 kB)
Collecting autoarray==0.14.2
Using cached autoarray-0.14.2-py3-none-any.whl (279 kB)
Collecting autogalaxy==0.14.4
Using cached autogalaxy-0.14.4-py3-none-any.whl (245 kB)
Collecting autoarray==0.14.0
Using cached autoarray-0.14.0-py3-none-any.whl (279 kB)
Collecting autogalaxy==0.14.3
Using cached autogalaxy-0.14.3-py3-none-any.whl (244 kB)
Collecting autogalaxy==0.14.2
Using cached autogalaxy-0.14.2-py3-none-any.whl (244 kB)
Collecting autogalaxy==0.14.1
Using cached autogalaxy-0.14.1-py3-none-any.whl (244 kB)
Collecting autogalaxy==0.13.4
Using cached autogalaxy-0.13.4-py3-none-any.whl (239 kB)
Collecting autoconf==0.6.1
Using cached autoconf-0.6.1-py3-none-any.whl (11 kB)
Collecting autofit==0.67.2
Using cached autofit-0.67.2-py3-none-any.whl (278 kB)
Collecting autoarray==0.13.2
Using cached autoarray-0.13.2-py3-none-any.whl (277 kB)
Collecting autogalaxy==0.13.3
Using cached autogalaxy-0.13.3-py3-none-any.whl (239 kB)
Collecting autofit==0.67.1
Using cached autofit-0.67.1-py3-none-any.whl (278 kB)
Collecting autogalaxy==0.13.2
Using cached autogalaxy-0.13.2-py3-none-any.whl (239 kB)
Collecting autoarray==0.13.1
Using cached autoarray-0.13.1-py3-none-any.whl (277 kB)
Collecting autofit==0.67.0
Using cached autofit-0.67.0-py3-none-any.whl (236 kB)
Collecting autogalaxy==0.13.1
Using cached autogalaxy-0.13.1-py3-none-any.whl (239 kB)
Collecting autogalaxy==0.12.7
Using cached autogalaxy-0.12.7-py3-none-any.whl (243 kB)
Collecting autoarray==0.12.2
Using cached autoarray-0.12.2-py3-none-any.whl (271 kB)
Collecting autofit==0.65.0
Using cached autofit-0.65.0-py3-none-any.whl (236 kB)
Collecting autogalaxy==0.12.6
Using cached autogalaxy-0.12.6-py3-none-any.whl (241 kB)
Collecting autoarray==0.12.1
Using cached autoarray-0.12.1-py3-none-any.whl (271 kB)
Collecting autogalaxy==0.12.5
Using cached autogalaxy-0.12.5-py3-none-any.whl (241 kB)
Collecting autogalaxy==0.12.4
Using cached autogalaxy-0.12.4-py3-none-any.whl (241 kB)
Collecting autoarray==0.12.0
Using cached autoarray-0.12.0-py3-none-any.whl (271 kB)
Collecting autofit==0.64.2
Using cached autofit-0.64.2-py3-none-any.whl (235 kB)
Collecting autoarray==0.11.11
Using cached autoarray-0.11.11-py3-none-any.whl (252 kB)
Collecting autogalaxy==0.12.3
Using cached autogalaxy-0.12.3-py3-none-any.whl (241 kB)
Collecting autofit==0.64.1
Using cached autofit-0.64.1-py3-none-any.whl (235 kB)
Collecting autoarray==0.11.10
Using cached autoarray-0.11.10-py3-none-any.whl (250 kB)
Collecting autogalaxy==0.12.2
Using cached autogalaxy-0.12.2-py3-none-any.whl (241 kB)
Collecting autogalaxy==0.11.4
Using cached autogalaxy-0.11.4-py3-none-any.whl (240 kB)
Collecting autoarray==0.11.9
Using cached autoarray-0.11.9-py3-none-any.whl (251 kB)
Collecting autogalaxy==0.11.3
Using cached autogalaxy-0.11.3-py3-none-any.whl (240 kB)
Collecting autofit==0.64.0
Using cached autofit-0.64.0-py3-none-any.whl (136 kB)
Collecting autoarray==0.11.8
Using cached autoarray-0.11.8-py3-none-any.whl (266 kB)
Collecting autogalaxy==0.11.2
Using cached autogalaxy-0.11.2-py3-none-any.whl (241 kB)
Collecting autofit==0.62.2
Using cached autofit-0.62.2-py3-none-any.whl (136 kB)
Collecting autogalaxy==0.11.1
Using cached autogalaxy-0.11.1-py3-none-any.whl (241 kB)
Collecting autofit==0.62.1
Using cached autofit-0.62.1-py3-none-any.whl (136 kB)
Collecting autogalaxy==0.11.0
Using cached autogalaxy-0.11.0-py3-none-any.whl (241 kB)
Collecting autofit==0.62.0
Using cached autofit-0.62.0-py3-none-any.whl (136 kB)
Collecting autofit==0.61.5
Using cached autofit-0.61.5-py3-none-any.whl (136 kB)
Collecting autogalaxy==0.10.16
Using cached autogalaxy-0.10.16-py3-none-any.whl (241 kB)
Collecting GetDist==1.0.3
Using cached GetDist-1.0.3.tar.gz (753 kB)
Collecting autogalaxy==0.10.15
Using cached autogalaxy-0.10.15-py3-none-any.whl (241 kB)
Collecting autoarray==0.11.7
Using cached autoarray-0.11.7-py3-none-any.whl (266 kB)
Collecting autogalaxy==0.10.13
Using cached autogalaxy-0.10.13-py3-none-any.whl (241 kB)
Collecting autoarray==0.11.5
Using cached autoarray-0.11.5-py3-none-any.whl (268 kB)
Collecting autoarray==0.11.4
Using cached autoarray-0.11.4-py3-none-any.whl (251 kB)
Collecting autogalaxy==0.10.12
Using cached autogalaxy-0.10.12-py3-none-any.whl (240 kB)
Collecting autofit==0.61.4
Using cached autofit-0.61.4-py3-none-any.whl (136 kB)
Collecting autofit==0.61.3
Using cached autofit-0.61.3-py3-none-any.whl (136 kB)
Collecting autogalaxy==0.10.11
Using cached autogalaxy-0.10.11-py3-none-any.whl (240 kB)
Collecting autoarray==0.11.3
Using cached autoarray-0.11.3-py3-none-any.whl (251 kB)
Collecting autofit==0.61.2
Using cached autofit-0.61.2-py3-none-any.whl (136 kB)
Collecting autogalaxy==0.10.10
Using cached autogalaxy-0.10.10-py3-none-any.whl (240 kB)
Collecting autogalaxy==0.10.8
Using cached autogalaxy-0.10.8-py3-none-any.whl (240 kB)
Collecting autoarray==0.11.2
Using cached autoarray-0.11.2-py3-none-any.whl (250 kB)
Collecting autofit==0.60.2
Using cached autofit-0.60.2-py3-none-any.whl (134 kB)
Collecting autogalaxy==0.10.7
Using cached autogalaxy-0.10.7-py3-none-any.whl (240 kB)
Collecting autofit==0.60.1
Using cached autofit-0.60.1-py3-none-any.whl (132 kB)
Collecting autogalaxy==0.10.6
Using cached autogalaxy-0.10.6-py3-none-any.whl (240 kB)
Collecting autogalaxy==0.10.5
Using cached autogalaxy-0.10.5-py3-none-any.whl (239 kB)
Collecting autogalaxy==0.10.4
Using cached autogalaxy-0.10.4-py3-none-any.whl (239 kB)
Collecting autofit==0.59.7
Using cached autofit-0.59.7-py3-none-any.whl (130 kB)
Collecting autogalaxy==0.10.3
Using cached autogalaxy-0.10.3-py3-none-any.whl (239 kB)
Collecting autogalaxy==0.10.2
Using cached autogalaxy-0.10.2-py3-none-any.whl (239 kB)
Collecting autofit==0.59.6
Using cached autofit-0.59.6-py3-none-any.whl (129 kB)
Collecting autofit==0.59.5
Using cached autofit-0.59.5-py3-none-any.whl (129 kB)
Collecting autogalaxy==0.10.1
Using cached autogalaxy-0.10.1-py3-none-any.whl (239 kB)
Collecting autoarray==0.11.1
Using cached autoarray-0.11.1-py3-none-any.whl (250 kB)
Collecting autoarray==0.11.0
Using cached autoarray-0.11.0-py3-none-any.whl (250 kB)
Collecting autoconf==0.6.0
Using cached autoconf-0.6.0-py3-none-any.whl (11 kB)
Collecting autofit==0.59.3
Using cached autofit-0.59.3-py3-none-any.whl (118 kB)
Collecting autogalaxy==0.10.0
Using cached autogalaxy-0.10.0-py3-none-any.whl (239 kB)
Collecting autofit==0.59.1
Using cached autofit-0.59.1-py3-none-any.whl (118 kB)
Collecting autofit==0.58.0
Using cached autofit-0.58.0-py3-none-any.whl (92 kB)
Collecting autogalaxy==0.9.2
Using cached autogalaxy-0.9.2-py3-none-any.whl (211 kB)
Collecting autoarray==0.10.7
Using cached autoarray-0.10.7-py3-none-any.whl (225 kB)
Collecting autoconf==0.5.0
Using cached autoconf-0.5.0-py3-none-any.whl (11 kB)
Collecting dill==0.2.8.2
Using cached dill-0.2.8.2.tar.gz (150 kB)
Collecting corner==2.0.1
Downloading corner-2.0.1.tar.gz (10 kB)
Collecting autoarray==0.10.6
Using cached autoarray-0.10.6-py3-none-any.whl (223 kB)
Collecting autofit==0.57.2
Using cached autofit-0.57.2-py3-none-any.whl (91 kB)
Collecting autogalaxy==0.9.0
Using cached autogalaxy-0.9.0-py3-none-any.whl (213 kB)
Collecting autoarray==0.10.5
Using cached autoarray-0.10.5-py3-none-any.whl (223 kB)
Collecting autogalaxy==0.1.0
Using cached autogalaxy-0.1.0-py3-none-any.whl (213 kB)
Collecting autoconf==0.4.0
Using cached autoconf-0.4.0-py3-none-any.whl (14 kB)
Collecting autofit==0.57.0
Using cached autofit-0.57.0-py3-none-any.whl (81 kB)
Collecting pymultinest
Using cached pymultinest-2.11-py2.py3-none-any.whl (50 kB)
Collecting typing-inspect==0.4.0
Using cached typing_inspect-0.4.0-py3-none-any.whl (5.0 kB)
Collecting GetDist
Using cached GetDist-1.1.4-py3-none-any.whl
Collecting pyquad==0.0.4.0
Using cached pyquad-0.0.4.0.tar.gz (138 kB)
ERROR: Command errored out with exit status 1:
command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_115529a08de6445193bf6086c4cfd46c\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_115529a08de6445193bf6086c4cfd46c\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\dorey\AppData\Local\Temp\pip-pip-egg-info-6cdv86iq'
cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_115529a08de6445193bf6086c4cfd46c\
Complete output (12 lines):
Traceback (most recent call last):
File "C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_115529a08de6445193bf6086c4cfd46c\setup.py", line 7, in
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\pyquad_115529a08de6445193bf6086c4cfd46c\setup.py", line 9, in <module>
raise ImportError("Please install numpy and cython before building pyquad!")
ImportError: Please install numpy and cython before building pyquad!
----------------------------------------
Edit setup.cfg to change the build options
BUILDING MATPLOTLIB matplotlib: yes [3.0.3] python: yes [3.8.8 (default, Feb 24 2021, 15:54:32) [MSC v.1928 64 bit (AMD64)]] platform: yes [win32]
REQUIRED DEPENDENCIES AND EXTENSIONS numpy: yes [version 1.19.2] install_requires: yes [handled by setuptools] libagg: yes [pkg-config information for 'libagg' could not be found. Using local copy.] freetype: yes [Using unknown version found on system.] png: yes [Using unknown version found on system.] qhull: yes [pkg-config information for 'libqhull' could not be found. Using local copy.]
OPTIONAL SUBPACKAGES sample_data: yes [installing] toolkits: yes [installing] tests: no [skipping due to configuration] toolkits_tests: no [skipping due to configuration]
OPTIONAL BACKEND EXTENSIONS agg: yes [installing] tkagg: yes [installing; run-time loading from Python Tcl / Tk] macosx: no [Mac OS-X only] windowing: yes [installing]
OPTIONAL PACKAGE DATA dlls: no [skipping due to configuration]
ERROR: Failed building wheel for matplotlib Running setup.py clean for matplotlib Building wheel for numpy (setup.py) ... error ERROR: Command errored out with exit status 1: command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\dorey\AppData\Local\Temp\pip-wheel-zutgskt6' cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\ Complete output (288 lines): Running from numpy source directory. C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\misc_util.py:476: SyntaxWarning: "is" with a literal. Did you mean "=="? return is_string(s) and ('*' in s or '?' is s) blas_opt_info: blas_mkl_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries mkl_rt not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
blis_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries blis not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
openblas_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries openblas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']' customize GnuFCompiler Could not locate executable g77 Could not locate executable f77 customize IntelVisualFCompiler Could not locate executable ifort Could not locate executable ifl customize AbsoftFCompiler Could not locate executable f90 customize CompaqVisualFCompiler Could not locate executable DF customize IntelItaniumVisualFCompiler Could not locate executable efl customize Gnu95FCompiler Could not locate executable gfortran Could not locate executable f95 customize G95FCompiler Could not locate executable g95 customize IntelEM64VisualFCompiler customize IntelEM64TFCompiler Could not locate executable efort Could not locate executable efc customize PGroupFlangCompiler Could not locate executable flang don't know how to compile Fortran code on platform 'nt' NOT AVAILABLE
atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries tatlas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
atlas_3_10_blas_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries satlas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
atlas_blas_threads_info: Setting PTATLAS=ATLAS No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries ptf77blas,ptcblas,atlas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
atlas_blas_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries f77blas,cblas,atlas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
accelerate_info: NOT AVAILABLE
C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\system_info.py:638: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries blas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\system_info.py:638: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: NOT AVAILABLE
C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\system_info.py:638: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE
'svnversion' n'est pas reconnu en tant que commande interne ou externe, un programme ex‚cutable ou un fichier de commandes. non-existing path in 'numpy\distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries mkl_rt not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
openblas_lapack_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries openblas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
openblas_clapack_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries openblas,lapack not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
atlas_3_10_threads_info: Setting PTATLAS=ATLAS No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries tatlas,tatlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries tatlas,tatlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries tatlas,tatlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries tatlas,tatlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE
atlas_3_10_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries satlas,satlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries satlas,satlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries satlas,satlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries satlas,satlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE
atlas_threads_info: Setting PTATLAS=ATLAS No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries ptf77blas,ptcblas,atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries ptf77blas,ptcblas,atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries ptf77blas,ptcblas,atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries ptf77blas,ptcblas,atlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE
atlas_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries f77blas,cblas,atlas not found in C:\Users\dorey.conda\envs\autolens\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries f77blas,cblas,atlas not found in C:\ No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries f77blas,cblas,atlas not found in C:\Users\dorey.conda\envs\autolens\libs No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries f77blas,cblas,atlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE
lapack_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries lapack not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\system_info.py:638: UserWarning: Lapack (http://www.netlib.org/lapack/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [lapack]) or by setting the LAPACK environment variable. self.calc_info() lapack_src_info: NOT AVAILABLE
C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\numpy\distutils\system_info.py:638: UserWarning: Lapack (http://www.netlib.org/lapack/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [lapack_src]) or by setting the LAPACK_SRC environment variable. self.calc_info() NOT AVAILABLE
ERROR: Failed building wheel for numpy Running setup.py clean for numpy ERROR: Command errored out with exit status 1: command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' clean --all cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\numpy_bfa94a6a080849f1891c69c240f2e8ed Complete output (10 lines): Running from numpy source directory.
setup.py clean
is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add --force
to your command to use it anyway if you must (unsupported).
ERROR: Failed building wheel for scikit-image Building wheel for scipy (setup.py) ... error ERROR: Command errored out with exit status 1: command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\dorey\AppData\Local\Temp\pip-wheel-_81i4g0g' cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\ Complete output (132 lines): C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py:114: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp Running from scipy source directory. lapack_opt_info: lapack_mkl_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries mkl_rt not found in ['C:/Users/dorey/.conda/envs/autolens\Library\lib'] NOT AVAILABLE
openblas_lapack_info: libraries openblas not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']' customize GnuFCompiler Could not locate executable g77 Could not locate executable f77 customize IntelVisualFCompiler Could not locate executable ifort Could not locate executable ifl customize AbsoftFCompiler Could not locate executable f90 customize CompaqVisualFCompiler Could not locate executable DF customize IntelItaniumVisualFCompiler Could not locate executable efl customize Gnu95FCompiler Could not locate executable gfortran Could not locate executable f95 customize G95FCompiler Could not locate executable g95 customize IntelEM64VisualFCompiler customize IntelEM64TFCompiler Could not locate executable efort Could not locate executable efc customize PGroupFlangCompiler Could not locate executable flang don't know how to compile Fortran code on platform 'nt' NOT AVAILABLE
openblas_clapack_info: libraries openblas,lapack not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
flame_info: libraries flame not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries tatlas,tatlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries lapack_atlas not found in C:\ libraries tatlas,tatlas not found in C:\ libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries tatlas,tatlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib libraries tatlas,tatlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE
atlas_3_10_info: libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries satlas,satlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries lapack_atlas not found in C:\ libraries satlas,satlas not found in C:\ libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries satlas,satlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib libraries satlas,satlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE
atlas_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries ptf77blas,ptcblas,atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries lapack_atlas not found in C:\ libraries ptf77blas,ptcblas,atlas not found in C:\ libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries ptf77blas,ptcblas,atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib libraries ptf77blas,ptcblas,atlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE
atlas_info: libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries f77blas,cblas,atlas not found in C:\Users\dorey.conda\envs\autolens\lib libraries lapack_atlas not found in C:\ libraries f77blas,cblas,atlas not found in C:\ libraries lapack_atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries f77blas,cblas,atlas not found in C:\Users\dorey.conda\envs\autolens\libs libraries lapack_atlas not found in C:\ProgramData\Anaconda3\Library\lib libraries f77blas,cblas,atlas not found in C:\ProgramData\Anaconda3\Library\lib <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE
accelerate_info: NOT AVAILABLE
lapack_info: libraries lapack not found in ['C:\Users\dorey\.conda\envs\autolens\lib', 'C:\', 'C:\Users\dorey\.conda\envs\autolens\libs', 'C:\ProgramData\Anaconda3\Library\lib'] NOT AVAILABLE
C:\Users\dorey.conda\envs\autolens\lib\site-packages\numpy\distutils\system_info.py:1748: UserWarning: Lapack (http://www.netlib.org/lapack/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [lapack]) or by setting the LAPACK environment variable. return getattr(self, '_calcinfo{}'.format(name))() lapack_src_info: NOT AVAILABLE
C:\Users\dorey.conda\envs\autolens\lib\site-packages\numpy\distutils\system_info.py:1748: UserWarning: Lapack (http://www.netlib.org/lapack/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [lapack_src]) or by setting the LAPACK_SRC environment variable. return getattr(self, '_calcinfo{}'.format(name))() NOT AVAILABLE
ERROR: Failed building wheel for scipy Running setup.py clean for scipy ERROR: Command errored out with exit status 1: command: 'C:\Users\dorey.conda\envs\autolens\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' clean --all cwd: C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602 Complete output (11 lines): C:\Users\dorey\AppData\Local\Temp\pip-install-arggwlsz\scipy_8e2d3df306664a32a604a7d17c8e1602\setup.py:114: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp
setup.py clean
is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add --force
to your command to use it anyway if you must (unsupported).
ERROR: Failed cleaning build dir for scipy Failed to build Cython matplotlib numpy scikit-image scipy ERROR: Could not build wheels for scikit-image which use PEP 517 and cannot be installed directly
(autolens) C:\Users\dorey>pip show autolens
WARNING: Package(s) not found: autolens
(autolens) C:\Users\dorey>python Python 3.8.8 (default, Feb 24 2021, 15:54:32) [MSC v.1928 64 bit (AMD64)] :: Anaconda, Inc. on win32 Type "help", "copyright", "credits" or "license" for more information.
import autolens Traceback (most recent call last): File "
", line 1, in ModuleNotFoundError: No module named 'autolens' `
I get this (sorry I didn't know what you wanted exacty so I pasted everything, and I have no idea how to frmat it properly).
What operating system are you on?
And can you try the following:
pip install pyquad==0.7.0
pip install autolens --ignore-installed pyquad
Ah, you're on Windows. We are a bit less mature with installations on Windows so no surprise there are issues!
I think I know the problem and think the above commands should fix it, or help us progress :).
Copy and paste me the text after each command please!
Yes I'm on windows
There you go :)
` (base) C:\Users\dorey>conda activate autolens
(autolens) C:\Users\dorey>pip install pyquad==0.7.0 Collecting pyquad==0.7.0 Using cached pyquad-0.7.0-cp38-cp38-win_amd64.whl (126 kB) Requirement already satisfied: numba in c:\users\dorey.conda\envs\autolens\lib\site-packages (from pyquad==0.7.0) (0.53.1) Collecting cython Using cached Cython-0.29.22-cp38-cp38-win_amd64.whl (1.7 MB) Requirement already satisfied: numpy in c:\users\dorey.conda\envs\autolens\lib\site-packages (from pyquad==0.7.0) (1.19.2) Requirement already satisfied: llvmlite<0.37,>=0.36.0rc1 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from numba->pyquad==0.7.0) (0.36.0) Requirement already satisfied: setuptools in c:\users\dorey.conda\envs\autolens\lib\site-packages (from numba->pyquad==0.7.0) (52.0.0.post20210125) Installing collected packages: cython, pyquad Successfully installed cython-0.29.22 pyquad-0.7.0
ERROR: Command errored out with exit status 1: 'C:\Users\dorey.conda\envs\autolens\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-xpb48_9y\pyquad_c390f5160a434f2586e562fa0085b2b3\setup.py'"'"'; file='"'"'C:\Users\dorey\AppData\Local\Temp\pip-install-xpb48_9y\pyquad_c390f5160a434f2586e562fa0085b2b3\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Users\dorey\AppData\Local\Temp\pip-record-a3kp2fg7\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\dorey.conda\envs\autolens\Include\pyquad' Check the logs for full command output.
(autolens) C:\Users\dorey>`
Okay, this happened to me yesterday, so I know how we can fix it from here. Its a bit fiddly but shouldn't take long.
First, the following commands (the first is a repeat but just making sure of things):
pip install pyquad==0.7.0
pip install autoconf==0.8.0 --no-deps
pip install autofit==0.74.0 --no-deps
pip install autoarray==0.19.0 --no-deps
pip install autogalaxy==0.18.5 --no-deps
pip install autolens==1.14.0 --no-deps
This should get us to the point where autolens is successfully installed. You can test this by running the welcome script.
I anticipate we'll see a new error, which you can copy and paste over here for us to push through the final fixes :). If you get anything that looks like an error beore that paste it here!
I get an error here (at least I guess it is, since it writes 'ERROR' in red :D ) `(autolens) C:\Users\dorey> pip install autofit==0.74.0 --no-deps Collecting autofit==0.74.0 Using cached autofit-0.74.0-py3-none-any.whl (1.6 MB) Installing collected packages: autofit ERROR: Could not install packages due to an OSError: [WinError 3] Le chemin d’accès spécifié est introuvable: 'C:\Users\dorey\.conda\envs\autolens\Lib\site-packages\test_autofit\database\mass_siesource_sersic\phase_mass[sie]_source[bulge]\settingsimaging[grid_sub_2]lens[pos_off]\dynesty_static[nlive_50bound_multi_vol_dec_0.5_vol_check_2.0__enlarge_1.0__sample_rwalk_walks_5_facc_0.2]'
(autolens) C:\Users\dorey>`
Ok, just keep going to the autoarray one..loooks fine.
ok thanks i'll keep going
This is my output `(autolens) C:\Users\dorey> pip install autolens==1.14.0 --no-deps Collecting autolens==1.14.0 Using cached autolens-1.14.0-py3-none-any.whl (174 kB) Installing collected packages: autolens Successfully installed autolens-1.14.0
(autolens) C:\Users\dorey>python welcome.py python: can't open file 'welcome.py': [Errno 2] No such file or directory
(autolens) C:\Users\dorey>cd \Users\dorey\autolens_workspace
(autolens) C:\Users\dorey\autolens_workspace>cd \autolens_workspace Le chemin d’accès spécifié est introuvable.
(autolens) C:\Users\dorey\autolens_workspace>python welcome.py python: can't open file 'welcome.py': [Errno 2] No such file or directory`
The ijnstallation was successful! 🥳
Has the welcome.py file gone missing? Doesnt look like an installation issues just that you've lost the python file somehow?
Yayyyy ! thank you so much !
I suppose, I will look for it manually, brb
Nope, got it right there in this directory C:\Users\dorey\autolens_workspace\autolens_workspace
I think I can't seem to access this directory from the terminal for some reason 🤔
The installation is completely separate from the workspace, so I would try deleting the workspace and redownloading it from scratch.
Okay I think I understand. Can you guide me through that please ? I'm unsure, and I wouldn't want to wreck the rest :)
You are currently in the path C:\Users\dorey\autolens_workspace
.
Move up one path via cd ..
- you should now be in C:\Users\dorey
.
Next naviagate to C:\Users\dorey
in your Windows file explorer and remove autolens_workspace
.
Then go back to your terminal:
git clone https://github.com/Jammy2211/autolens_workspace --depth 1
cd autolens_workspace
python welcome.py
If you get a permissions error when you try to delete the old autolens workspace let me know
I get this :
` (autolens) C:\Users\dorey>git clone https://github.com/Jammy2211/autolens_workspace --depth 1 Cloning into 'autolens_workspace'... remote: Enumerating objects: 852, done. remote: Counting objects: 100% (852/852), done. remote: Compressing objects: 100% (710/710), done.
Receiving objects: 100% (852/852), 93.32 MiB | 5.27 MiB/s, done. Resolving deltas: 100% (181/181), done. Updating files: 100% (814/814), done.
(autolens) C:\Users\dorey> cd autolens_workspace
(autolens) C:\Users\dorey\autolens_workspace> python welcome.py
############################################
############################################
PyAutoLens assumes that the `autolens_workspace` directory is the Python working directory.
This means that, when you run an example script, you should run it from the `autolens_workspace`
as follows:
cd path/to/autolens_workspace (if you are not already in the autolens_workspace).
python3 scripts/imaging/modeling/mass_total__source_parametric.py
The reasons for this are so that PyAutoLens can:
- Load configuration settings from config files in the `autolens_workspace/config` folder.
- Load example data from the `autolens_workspace/dataset` folder.
- Output the results of models fits to your hard-disk to the `autolens/output` folder.
If you have any errors relating to importing modules, loading data or outputting results it is likely because you
are not running the script with the `autolens_workspace` as the working directory!
[Press Enter to continue]
###############################
###############################
We`re now going to plot an image in PyAutoLens using Matplotlib, using the backend specified in the following
config file (the backend tells Matplotlib where to render the plot)"
autolens_workspace/config/visualize/general.ini -> [general] -> `backend`
The default entry for this is `default` (check the config file now). This uses the default Matplotlib backend
on your computer. For most users, pushing Enter now will show the figure without error.
However, we have had reports that if the backend is set up incorrectly on your system this plot can either
raise an error or cause the `welcome.py` script to crash without a message. If this occurs after you
push Enter, the error is because the Matplotlib backend on your computer is set up incorrectly.
To fix this in PyAutoLens, try changing the backend entry in the config file to one of the following values:"
backend=TKAgg
backend=Qt5Agg
backeknd=Qt4Agg
[Press Enter to continue]
Traceback (most recent call last):
File "welcome.py", line 60, in
(autolens) C:\Users\dorey\autolens_workspace> (autolens) C:\Users\dorey\autolens_workspace> `
Ok great we're in the home stretch!
Imma go ahead and pretend like I know what that means :) So "yay !" what do I do now, please ?
pip install astropy
pip install pylops==1.10.0
pip install pynufft==2020.2.7
pip install scikit-image
pip install scikit-learn
pip install scipy
pip install colossus==1.2.14
There will probably be a few more errors... just gotta tackle them one by one
okayyyy let's goo !
(thank you again for your help)
Just a question : shoul I run these commands in the autolens_workspace repository ? Actually, where should I run these please ?X)
It does not matter where you run them, so long as your conda enviroment is activated (e.g. you have the (autolens) thing in the bottom left)
Great, I'll brb !
`(autolens) C:\Users\dorey\autolens_workspace> pip install pylops==1.10.0 Collecting pylops==1.10.0 Downloading pylops-1.10.0-py3-none-any.whl (149 kB) |████████████████████████████████| 149 kB 467 kB/s Requirement already satisfied: numpy>=1.15.0 in c:\users\dorey.conda\envs\autolens\lib\site-packages (from pylops==1.10.0) (1.20.2) Requirement already satisfied: scipy in c:\users\dorey.conda\envs\autolens\lib\site-packages (from pylops==1.10.0) (1.6.2) Installing collected packages: pylops ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. autoarray 0.19.0 requires autoconf==0.7.7, but you have autoconf 0.8.0 which is incompatible. autoarray 0.19.0 requires dill>=0.3.1.1, but you have dill 0.2.8.2 which is incompatible. autoarray 0.19.0 requires pynufft==2020.2.7, but you have pynufft 2021.0.2 which is incompatible. Successfully installed pylops-1.10.0
(autolens) C:\Users\dorey\autolens_workspace>`
Think its an ERROR we can ignore, so keep going.
Alright !
Okay, I got the same error for pynufft and colossus, but I kept going, it says either "successfully installed" or "requirement already satisfied"
I tried running the welcome script and...
File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autofit\non_linear\mcmc\emcee.py", line 5, in <module> import emcee ModuleNotFoundError: No module named 'emcee'
pip install corner
pip install emcee
pip install dynesty
pip install pyswarms
Traceback (most recent call last): File "welcome.py", line 60, in <module> import autolens as al File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autolens\__init__.py", line 52, in <module> from . import plot File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autolens\plot\__init__.py", line 64, in <module> from autolens.plot.plotters.fit_imaging_plotters import FitImagingPlotter File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autolens\plot\plotters\fit_imaging_plotters.py", line 4, in <module> from autolens.plot.plotters import ray_tracing_plotters File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autolens\plot\plotters\ray_tracing_plotters.py", line 8, in <module> from autolens.lens import ray_tracing File "C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autolens\lens\ray_tracing.py", line 16, in <module> from autoarray import preloads as pload ImportError: cannot import name 'preloads' from 'autoarray' (C:\Users\dorey\.conda\envs\autolens\lib\site-packages\autoarray\__init__.py)
pip show autoarray
I think some very horrible thigns are happening to your conda environment atm :/
nooooooooo :'( poor conda
`(autolens) C:\Users\dorey\autolens_workspace>pip show autoarray Name: autoarray Version: 0.19.0 Summary: PyAuto Data Structures Home-page: https://github.com/Jammy2211/PyAutoArray Author: James Nightingale and Richard Hayes Author-email: james.w.nightingale@durham.ac.uk License: MIT License Location: c:\users\dorey.conda\envs\autolens\lib\site-packages Requires: autoconf, llvmlite, pynufft, decorator, numba, scikit-learn, numpy, pylops, dill, scipy, astropy, scikit-image Required-by: autolens, autogalaxy
(autolens) C:\Users\dorey\autolens_workspace>`
Ok wait try thiis:
pip install autoarray==0.20.0 --no-deps
T'was succesful
pip install autogalaxy==0.19.0 --no-deps
Ok then try another run of welcome.py...
Success
alright
hoooo my goodness
🥳 🥳 🥳 🥳 🥳 🥳 🥳
Thank you sooo much for you time and patience !
No problem, glad we got there (I had a bit of a scare towards the end!).
Hi ! I'm french, so please excuse me in advance if my English is not perfect :)
I need to use the autolens package for a project on gravitational lensing, so I followed carefully the steps indicated in your Installation guide > Installation with anaconda (I have anaconda installed on my computer already), and everything works until the last step where I must input
python3 welcome.py
. (In my case, the terminal only recognizespython
instead ofpython3
, so I have typed inpython welcome.py
)Indeed, it gives me all the warnings, and then proceeds to say
Traceback (most recent call last): File "welcome.py", line 60, in <module> import autolens as al ModuleNotFoundError: No module named 'autolens'
I am desperate as I have no Idea how to solve this problem, hence this request: Pleeeeease help me :)
Have a nice day,
Orient