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JaneliaSciComp / BigStitcher-Spark

Running compute-intense parts of BigStitcher distributed
BSD 2-Clause "Simplified" License
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Update build dependency versions #27

Closed kgabor closed 3 months ago

kgabor commented 3 months ago

I need to update bigdataviewer-omezarr dependency version, so I'll try to harmonize more or less with the Fiji released versions the other packages in the pom.

kgabor commented 3 months ago

https://github.com/JaneliaSciComp/BigStitcher-Spark/pull/28 I reverted back the other packages due to new error in creating groups by N5Writer in aws. We'll address this later. The problem is, I think, that setup0/timepoint0/s0 does not exist while setDatasetAttributes tries to read it in already before setting them.

org.janelia.saalfeldlab.n5.N5Exception$N5IOException: setup0/timepoint0/s0 is not a group or dataset.
    at org.janelia.saalfeldlab.n5.GsonKeyValueN5Writer.setAttributes(GsonKeyValueN5Writer.java:154)
    at org.janelia.saalfeldlab.n5.N5Writer.setDatasetAttributes(N5Writer.java:138)
    at org.janelia.saalfeldlab.n5.N5Writer.createDataset(N5Writer.java:206)
    at org.janelia.saalfeldlab.n5.N5Writer.createDataset(N5Writer.java:228)
    at net.preibisch.bigstitcher.spark.AffineFusion.call(AffineFusion.java:361)