Error in autosorting

[LiuDaveLiu]

If you have a usage or support question, come join our Gitter and ask your question there. If you found a bug, please provide all of the following:

Output of jrc version

JRCLUST v4.0.1 "Edward" (3d2e75c)

Output of gpuDevice (if you're seeing a GPU error)

The command you used

jrc sort myparam.prm (e.g., jrc detect-sort myparam.prm)

If manually sorting, what it is you tried to do

Console output

Error using horzcat Dimensions of arrays being concatenated are not consistent.

Error in jrclust.features.getSiteFeatures (line 53) siteFeatures = [sf1, sf2; single(spikeData.spikeTimes([spikes1; spikes2]))']; % TW

Error in jrclust.sort.computeRho (line 46) [siteFeatures, ~, n1, n2, spikeOrder] = jrclust.features.getSiteFeatures(dRes.spikeFeatures, iSite, spikeData, hCfg);

Error in jrclust.sort.SortController/sort (line 44) res = jrclust.sort.computeRho(dRes, res, obj.hCfg);

Error in JRC/sort (line 38) sRes = obj.hSort.sort(obj.res);

Error in JRC/run (line 20) obj.sort();

Error in jrc (line 20) hJRC.run();

[LiuDaveLiu]

% function [mrFet12, viSpk12, n1, n2, viiSpk12ord] = fet12site(trFet_spk, S0, P, iSite, vlRedo_spk) function [siteFeatures, spikes, n1, n2, spikeOrder] = getSiteFeatures(spikeFeatures, site, spikeData, hCfg) %GETSITEFEATURES Get features occurring on primary and secondary (optionally tertiary) sites [siteFeatures, spikes, n1, n2, spikeOrder] = deal([]);

nPeaksFeatures = hCfg.nPeaksFeatures; % or maybe size(spikeFeatures, 2) ? 
timeFeatureFactor = hCfg.getOr('timeFeatureFactor', 0); % TW

if isfield(spikeData, 'spikes1') && ~isempty(spikeData.spikes1)
    spikes1 = int32(spikeData.spikes1);
else
    return
end

if isfield(spikeData, 'spikes2') && ~isempty(spikeData.spikes2)
    spikes2 = int32(spikeData.spikes2);
else
    spikes2 = [];
    nPeaksFeatures = 1;
end

if isfield(spikeData, 'spikes3') && ~isempty(spikeData.spikes3)
    spikes3 = int32(spikeData.spikes3);
else
    spikes3 = [];
end

if isfield(spikeData, 'vlRedo_spk') && ~isempty(spikeData.vlRedo_spk)
    spikes1 = spikes1(spikeData.vlRedo_spk(spikes1));
    spikes2 = spikes2(spikeData.vlRedo_spk(spikes2));
    spikes3 = spikes3(spikeData.vlRedo_spk(spikes3));
end

n1 = numel(spikes1);
n2 = numel(spikes2);

% get features for each site
if nPeaksFeatures == 1
    sf1 = squeeze(spikeFeatures(:, 1, spikes1));
    if iscolumn(sf1), sf1 = sf1'; end

    siteFeatures = [sf1; single(spikeData.spikeTimes(spikes1))']; % TW
    siteFeatures(end, :) = timeFeatureFactor*std(siteFeatures(1, :)).*siteFeatures(end, :)./std(siteFeatures(end, :)); % TW

    spikes = spikes1;
elseif nPeaksFeatures == 2
    sf1 = squeeze(spikeFeatures(:, 1, spikes1));

    sf2 = squeeze(spikeFeatures(:, 2, spikes2));
    if iscolumn(sf1) && iscolumn(sf2)
        sf1 = sf1';
        sf2 = sf2';
    end

    siteFeatures = [sf1, sf2; single(spikeData.spikeTimes([spikes1; spikes2]))']; % TW
    siteFeatures(end, :) = timeFeatureFactor*std(siteFeatures(1, :)).*siteFeatures(end, :)./std(siteFeatures(end, :)); % TW

    spikes = [spikes1; spikes2];
else % nPeaksFeatures == 3
    sf1 = squeeze(spikeFeatures(:, 1, spikes1));
    if iscolumn(sf1), sf1 = sf1'; end

    sf2 = squeeze(spikeFeatures(:, 2, spikes2));
    if iscolumn(sf2), sf2 = sf2'; end

    sf3 = squeeze(spikeFeatures(:, 3, spikes3));
    if iscolumn(sf3), sf3 = sf3'; end

    siteFeatures = [sf1, sf2, sf3; single(spikeData.spikeTimes([spikes1; spikes2; spikes3]))'];
    siteFeatures(end, :) = timeFeatureFactor*std(siteFeatures(1, :)).*siteFeatures(end, :)./std(siteFeatures(end, :)); % TW

    spikes = [spikes1; spikes2; spikes3];
    n2 = n2 + numel(spikes3);
end

% weight features by distance from site, greater for nearer sites
try
    nSites = hCfg.nSitesEvt;

    if hCfg.weightFeatures && nSites >= hCfg.minSitesWeightFeatures
        nFeaturesPerSite = size(siteFeatures, 1) / nSites;

        weights = distWeight(site, nSites, hCfg);
        weights = repmat(weights(:), [nFeaturesPerSite, 1]);

        siteFeatures = bsxfun(@times, siteFeatures, weights(:));
    end
catch ME
    warning('error in distWeight: ''%s'', using unweighted features', ME.message);
end

spikeOrder = jrclust.utils.rankorder(spikes, 'ascend');

end

%% LOCAL FUNCTIONS function weights = distWeight(site, nSites, hCfg) %DISTWEIGHT Compute weights for neighboring sites, larger for nearer siteLoc = hCfg.siteLoc(hCfg.siteNeighbors(1:nSites, site), :); siteDists = pdist2(siteLoc(1, :), siteLoc);

weights = 2.^(-siteDists/hCfg.evtDetectRad);
weights = weights(:);

end

[LiuDaveLiu]

the function is in C:\Github\JRCLUST+jrclust+features

[LiuDaveLiu]

I got a very similar error, can you please take a look?

Error using vertcat Dimensions of arrays being concatenated are not consistent.

Error in jrclust.features.getSiteFeatures (line 42) siteFeatures = [sf1; single(spikeData.spikeTimes(spikes1))']; % TW

Error in jrclust.sort.computeRho (line 46) [siteFeatures, ~, n1, n2, spikeOrder] = jrclust.features.getSiteFeatures(dRes.spikeFeatures, iSite, spikeData, hCfg);

Error in jrclust.sort.SortController/sort (line 44) res = jrclust.sort.computeRho(dRes, res, obj.hCfg);

Error in JRC/sort (line 38) sRes = obj.hSort.sort(obj.res);

Error in JRC/run (line 20) obj.sort();

Error in jrc (line 20) hJRC.run();

[DJ-Hayden]

I figured this out (if you're still working on it).

if iscolumn(sf1), sf1 = sf1'; end

should be

if isrow(sf1), sf1 = sf1'; end

Same for the sf2 line below that.