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JaneliaSciComp / bigstream

Tools for distributed alignment of massive images
BSD 3-Clause "New" or "Revised" License
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can't find function dog_ransac_affine #4

Closed mkunst23 closed 3 years ago

mkunst23 commented 3 years ago

Hi,

I'm trying to run the global affine on the test dataset using the tutorial code:

now we'll use bigstream

from bigstream import affine

see next section for explanation of the parameters

global_affine = affine.dog_ransac_affine( fix_lowres_data, mov_lowres_data, fix_lowres_spacing, mov_lowres_spacing, cc_radius=8, nspots=2000, match_threshold=0.75, align_threshold=2.5, )

But when I run it it tells me the function does not exist. I checked and it's not there but there is this function:

ransac_affine

Am I supposed to use this function? If so I need to set min_radius and max_radius. Any suggestions for good starting values?

Thanks, Michael

mkunst23 commented 3 years ago

never mind, I was using an outdated tutorial