Many current bigstream users are working with Jupyter notebooks given to them by Greg (me). Parameters for various steps in their registration pipeline are defined throughout the notebook. First, an updated standard notebook would be very valuable. Second formatting all parameters in such a way that they can easily be dumped into a json or yaml file would help interface with automated tools that want to wrap or call bigstream, like NextFlow.
Many current bigstream users are working with Jupyter notebooks given to them by Greg (me). Parameters for various steps in their registration pipeline are defined throughout the notebook. First, an updated standard notebook would be very valuable. Second formatting all parameters in such a way that they can easily be dumped into a json or yaml file would help interface with automated tools that want to wrap or call bigstream, like NextFlow.