Open gregpinero opened 12 years ago
This is low priority. Figure out what went wrong and fix it.
Background:
Hi Greg, In a recent run of msg, I came across a very strange error that caused failure of one individual to finish producing hmm_fit data. I pasted the error below.
Thanks, David
cat msgRun2.7849.e5133361.152 hostname: Undefined variable. Unknown option: recrate Rscript msg/write-hmm-data.R -i indivY04_22_11_3-10_TTGTGT -d hmm_data/indivY04_22_11_3-10_TTGTGT -c 2,3,4,X Fatal error: cannot mkdir R_TempDir Rscript msg/fit-hmm.R -d hmm_data -i indivY04_22_11_3-10_TTGTGT -s female -o hmm_fit -p .05 -q .05 -r .000000001 -c 2,3,4,X -x X -y 2,3,4,X -z 0,.5,.5 -t 0 Fatal error: cannot mkdir R_TempDir
This is low priority. Figure out what went wrong and fix it.
Background:
Hi Greg, In a recent run of msg, I came across a very strange error that caused failure of one individual to finish producing hmm_fit data. I pasted the error below.
Thanks, David
cat msgRun2.7849.e5133361.152 hostname: Undefined variable. Unknown option: recrate Rscript msg/write-hmm-data.R -i indivY04_22_11_3-10_TTGTGT -d hmm_data/indivY04_22_11_3-10_TTGTGT -c 2,3,4,X Fatal error: cannot mkdir R_TempDir Rscript msg/fit-hmm.R -d hmm_data -i indivY04_22_11_3-10_TTGTGT -s female -o hmm_fit -p .05 -q .05 -r .000000001 -c 2,3,4,X -x X -y 2,3,4,X -z 0,.5,.5 -t 0 Fatal error: cannot mkdir R_TempDir