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JaneliaSciComp / msg

Multiplexed Shotgun Genotyping
http://genomics.princeton.edu/AndolfattoLab/MSG.html
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Add verbosity option for data output #16

Closed gregpinero closed 12 years ago

gregpinero commented 12 years ago

Option 1 Just hmm data Option 2 Just parsed files Option 3 All data

Also, are there any other large files that should be removed?

What should default verbosity be? Option 1?

dstern commented 12 years ago

Option 1 Just hmm data

If we keep only hmm_data, then we need to provide user with an option (in msg.cfg) to use just this folder. This will involve ignoring the absence of all the previous files, since msg currently by default looks for earlier folders and calculates them if they are absent.

Option 2 Just parsed files Option 3 All data

also remove, or better, never calculate:

ancestry-probs-par1-1.000000-0.000000-1.000000.plot.rda ancestry-probs-par2-1.000000-0.000000-1.000000.plot.rda ancestry-probs-par2-1.000000-0.010000-0.100000.thinned_plot.rda ancestry-probs-thinned-par2.tsv

On Oct 24, 2011, at 2:59 PM, Greg Pinero wrote:

Option 1 Just hmm data Option 2 Just parsed files Option 3 All data Also, are there any other large files that should be removed?

What should default verbosity be?  Option 1?

Reply to this email directly or view it on GitHub:https://github.com/JaneliaSciComp/msg/issues/16

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