Jbartlett6 / SDNet

SDNet, a model based deep learning method to estimate high quality FODs from indersampled DWI signal data.
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Cannot add MAE error correctly to only take into consideration voxels where there are fixels - would normally use -ignorezeros but the values we want to ignore are actually pi #14

Closed Jbartlett6 closed 1 year ago

Jbartlett6 commented 2 years ago

Tried using mrthreshold, however the threshold could not be vreated with the white matter mask due to the whiite matter mask only being 1 volume and the fixel image being many volumes. To overcome this the white matter mask needs tiling to produce a mask consisting of the same number of volumes as there are fixels. This can then be used as a true mask.