Conflicts graph

[floriancafiero]

We talked about improving the visualization of our graphs of conflicts. The current network is plotted with gplot (lines 284-285 in PCC.conflicts, as of today).

gplot(myNetwork, displaylabels, label = network.vertex.names(myNetwork), gmode = "graph", boxed.labels = TRUE)

Other packages could give a more interesting output:

• The networkD3 package allows for interactive handling of networks, which could be useful to users handling a large database with many conflicting variant locations.
• The ggplot2 package has become a reference, allows for extended possibilities compared to gplot. It could also be more perennial than networkD3, and produce easier to publish graphs.

[Jean-Baptiste-Camps]

For now, switched to igraph !