JakubCha
commented
5 years ago After scavenging through rtools related issues I found that it may be rtools problem. Have somebody had these issues with lidRplugins?
Closed JakubCha closed 5 years ago
JakubCha
commented
5 years ago After scavenging through rtools related issues I found that it may be rtools problem. Have somebody had these issues with lidRplugins?
JakubCha
commented
5 years ago Rtools problem. Uninstalled and installed once again setting right paths to Rtools. To make this issue actually meaningful I paste install log with some warnings :-) Cheers Jean!
The downloaded binary packages are in
C:\Users\Dell\AppData\Local\Temp\RtmpeGqKL0\downloaded_packages
√ checking for file 'C:\Users\Dell\AppData\Local\Temp\RtmpeGqKL0\remotes3b42ef96df7\Jean-Romain-lidRplugins-6bc0859/DESCRIPTION' ...
- preparing 'lidRplugins':
√ checking DESCRIPTION meta-information ...
- cleaning src
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'lidRplugins_0.1.0.tar.gz'
* installing *source* package 'lidRplugins' ...
** libs
*** arch - i386
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c BoundingBox.cpp -o BoundingBox.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c C_lastree_hamraz.cpp -o C_lastree_hamraz.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c C_lastrees_Ptrees.cpp -o C_lastrees_Ptrees.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c HamrazProfiles.cpp -o HamrazProfiles.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c Progress.cpp -o Progress.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c QuadTree.cpp -o QuadTree.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c Shapes.cpp -o Shapes.o
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c TreeSegment.cpp -o TreeSegment.o
In file included from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/intersection.hpp:37:0,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/intersection_strategies.hpp:28,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/strategies.hpp:37,
from E:/R-3.5.1/library/BH/include/boost/geometry/geometry.hpp:50,
from E:/R-3.5.1/library/BH/include/boost/geometry.hpp:17,
from TreeSegment.h:7,
from TreeSegment.cpp:1:
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp: In function 'void ptrees::TreeSegment::compute_orientation_score()':
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp:44:26: warning: '*((void*)& G +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T const d = c1 - c2;
^
TreeSegment.cpp:147:11: note: '*((void*)& G +8)' was declared here
point_t G;
^
In file included from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/intersection.hpp:37:0,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/intersection_strategies.hpp:28,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/strategies.hpp:37,
from E:/R-3.5.1/library/BH/include/boost/geometry/geometry.hpp:50,
from E:/R-3.5.1/library/BH/include/boost/geometry.hpp:17,
from TreeSegment.h:7,
from TreeSegment.cpp:1:
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp:44:26: warning: 'G' may be used uninitialized in this function [-Wmaybe-uninitialized]
T const d = c1 - c2;
^
TreeSegment.cpp:147:11: note: 'G' was declared here
point_t G;
^
c:/Rtools/mingw_32/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c TreeSegmentManager.cpp -o TreeSegmentManager.o
In file included from E:/R-3.5.1/library/Rcpp/include/Rcpp/vector/Vector.h:1124:0,
from E:/R-3.5.1/library/Rcpp/include/Rcpp/Vector.h:52,
from E:/R-3.5.1/library/Rcpp/include/Rcpp.h:40,
from E:/R-3.5.1/library/RcppArmadillo/include/RcppArmadillo.h:34,
from TreeSegment.h:10,
from TreeSegmentManager.h:4,
from TreeSegmentManager.cpp:1:
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h: In member function 'Rcpp::List ptrees::TreeSegmentManager::to_R()':
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h:124:2: warning: '*((void*)& bary +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
*it = converter_type::get(t2) ; ++it ;
^
TreeSegmentManager.cpp:280:13: note: '*((void*)& bary +8)' was declared here
point_t bary;
^
In file included from E:/R-3.5.1/library/Rcpp/include/Rcpp/vector/Vector.h:1124:0,
from E:/R-3.5.1/library/Rcpp/include/Rcpp/Vector.h:52,
from E:/R-3.5.1/library/Rcpp/include/Rcpp.h:40,
from E:/R-3.5.1/library/RcppArmadillo/include/RcppArmadillo.h:34,
from TreeSegment.h:10,
from TreeSegmentManager.h:4,
from TreeSegmentManager.cpp:1:
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h:123:2: warning: 'bary' may be used uninitialized in this function [-Wmaybe-uninitialized]
*it = converter_type::get(t1) ; ++it ;
^
TreeSegmentManager.cpp:280:13: note: 'bary' was declared here
point_t bary;
^
c:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o lidRplugins.dll tmp.def BoundingBox.o C_lastree_hamraz.o C_lastrees_Ptrees.o HamrazProfiles.o Progress.o QuadTree.o RcppExports.o Shapes.o TreeSegment.o TreeSegmentManager.o -LE:/R-3.5.1/bin/i386 -lRlapack -LE:/R-3.5.1/bin/i386 -lRblas -lgfortran -lm -lquadmath -LE:/R-3.5.1/bin/i386 -lR
installing to E:/R-3.5.1/library/lidRplugins/libs/i386
*** arch - x64
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c BoundingBox.cpp -o BoundingBox.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c C_lastree_hamraz.cpp -o C_lastree_hamraz.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c C_lastrees_Ptrees.cpp -o C_lastrees_Ptrees.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c HamrazProfiles.cpp -o HamrazProfiles.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c Progress.cpp -o Progress.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c QuadTree.cpp -o QuadTree.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c Shapes.cpp -o Shapes.o
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c TreeSegment.cpp -o TreeSegment.o
In file included from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/intersection.hpp:37:0,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/intersection_strategies.hpp:28,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/strategies.hpp:37,
from E:/R-3.5.1/library/BH/include/boost/geometry/geometry.hpp:50,
from E:/R-3.5.1/library/BH/include/boost/geometry.hpp:17,
from TreeSegment.h:7,
from TreeSegment.cpp:1:
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp: In function 'void ptrees::TreeSegment::compute_orientation_score()':
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp:44:26: warning: '*((void*)& G +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T const d = c1 - c2;
^
TreeSegment.cpp:147:11: note: '*((void*)& G +8)' was declared here
point_t G;
^
In file included from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/intersection.hpp:37:0,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/intersection_strategies.hpp:28,
from E:/R-3.5.1/library/BH/include/boost/geometry/strategies/strategies.hpp:37,
from E:/R-3.5.1/library/BH/include/boost/geometry/geometry.hpp:50,
from E:/R-3.5.1/library/BH/include/boost/geometry.hpp:17,
from TreeSegment.h:7,
from TreeSegment.cpp:1:
E:/R-3.5.1/library/BH/include/boost/geometry/strategies/cartesian/distance_pythagoras.hpp:44:26: warning: 'G' may be used uninitialized in this function [-Wmaybe-uninitialized]
T const d = c1 - c2;
^
TreeSegment.cpp:147:11: note: 'G' was declared here
point_t G;
^
c:/Rtools/mingw_64/bin/g++ -I"E:/R-3.5.1/include" -DNDEBUG -I"E:/R-3.5.1/library/BH/include" -I"E:/R-3.5.1/library/Rcpp/include" -I"E:/R-3.5.1/library/RcppArmadillo/include" -O2 -Wall -mtune=generic -c TreeSegmentManager.cpp -o TreeSegmentManager.o
In file included from E:/R-3.5.1/library/Rcpp/include/Rcpp/vector/Vector.h:1124:0,
from E:/R-3.5.1/library/Rcpp/include/Rcpp/Vector.h:52,
from E:/R-3.5.1/library/Rcpp/include/Rcpp.h:40,
from E:/R-3.5.1/library/RcppArmadillo/include/RcppArmadillo.h:34,
from TreeSegment.h:10,
from TreeSegmentManager.h:4,
from TreeSegmentManager.cpp:1:
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h: In member function 'Rcpp::List ptrees::TreeSegmentManager::to_R()':
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h:124:2: warning: '*((void*)& bary +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
*it = converter_type::get(t2) ; ++it ;
^
TreeSegmentManager.cpp:280:13: note: '*((void*)& bary +8)' was declared here
point_t bary;
^
In file included from E:/R-3.5.1/library/Rcpp/include/Rcpp/vector/Vector.h:1124:0,
from E:/R-3.5.1/library/Rcpp/include/Rcpp/Vector.h:52,
from E:/R-3.5.1/library/Rcpp/include/Rcpp.h:40,
from E:/R-3.5.1/library/RcppArmadillo/include/RcppArmadillo.h:34,
from TreeSegment.h:10,
from TreeSegmentManager.h:4,
from TreeSegmentManager.cpp:1:
E:/R-3.5.1/library/Rcpp/include/Rcpp/generated/Vector__create.h:123:2: warning: 'bary' may be used uninitialized in this function [-Wmaybe-uninitialized]
*it = converter_type::get(t1) ; ++it ;
^
TreeSegmentManager.cpp:280:13: note: 'bary' was declared here
point_t bary;
^
c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o lidRplugins.dll tmp.def BoundingBox.o C_lastree_hamraz.o C_lastrees_Ptrees.o HamrazProfiles.o Progress.o QuadTree.o RcppExports.o Shapes.o TreeSegment.o TreeSegmentManager.o -LE:/R-3.5.1/bin/x64 -lRlapack -LE:/R-3.5.1/bin/x64 -lRblas -lgfortran -lm -lquadmath -LE:/R-3.5.1/bin/x64 -lR
installing to E:/R-3.5.1/library/lidRplugins/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'lidRplugins'
finding HTML links ... wykonano
hamraz2016 html
lmfx html
multichm html
finding level-2 HTML links ... done
ptrees html
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (lidRplugins)
Making 'packages.html' ... wykonano
In R CMD INSTALL
sara-marson
commented
4 years ago Hi, I am trying to install lidRplugins for R x64 3.6.0. I installed Rtools 3.5. I receive the following failure message and I don't understand what should I do. Thank you in advance
> devtools::install_github("Jean-Romain/lidRplugins")
Downloading GitHub repo Jean-Romain/lidRplugins@master
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?
1: All
2: CRAN packages only
3: None
4: glue (1.3.1 -> 1.3.2 ) [CRAN]
5: sp (1.4-0 -> 1.4-1 ) [CRAN]
6: digest (0.6.24 -> 0.6.25 ) [CRAN]
7: shiny (1.4.0 -> 1.4.0.2) [CRAN]
8: crosstalk (1.0.0 -> 1.1.0.1) [CRAN]
9: manipulat... (0.10.0 -> 0.10.1 ) [CRAN]
10: rlang (0.4.4 -> 0.4.5 ) [CRAN]
11: units (0.6-5 -> 0.6-6 ) [CRAN]
Enter one or more numbers, or an empty line to skip updates:
1
NA (NA -> 663bc7288...) [Git]
assertive (NA -> 0.3-5 ) [CRAN]
fpc (NA -> 2.2-5 ) [CRAN]
glue (1.3.1 -> 1.3.2 ) [CRAN]
sp (1.4-0 -> 1.4-1 ) [CRAN]
digest (0.6.24 -> 0.6.25 ) [CRAN]
shiny (1.4.0 -> 1.4.0.2 ) [CRAN]
crosstalk (1.0.0 -> 1.1.0.1 ) [CRAN]
manipulat... (0.10.0 -> 0.10.1 ) [CRAN]
rlang (0.4.4 -> 0.4.5 ) [CRAN]
units (0.6-5 -> 0.6-6 ) [CRAN]
assertive... (NA -> 0.0-7 ) [CRAN]
assertive... (NA -> 0.0-4 ) [CRAN]
assertive... (NA -> 0.0-3 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-3 ) [CRAN]
mclust (NA -> 5.4.5 ) [CRAN]
DEoptimR (NA -> 1.0-8 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-3 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-3 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-2 ) [CRAN]
assertive... (NA -> 0.0-4 ) [CRAN]
assertive... (NA -> 0.0-3 ) [CRAN]
flexmix (NA -> 2.3-15 ) [CRAN]
prabclus (NA -> 2.3-2 ) [CRAN]
diptest (NA -> 0.75-7 ) [CRAN]
robustbase (NA -> 0.93-6 ) [CRAN]
Skipping 2 packages not available: velox, EBImage
Downloading git repo https://github.com/Jean-Romain/RcppConcaveman.git
√ checking for file 'C:\Users\saram\AppData\Local\Temp\Rtmpyk4wp5\file42042a3c44cf/DESCRIPTION' ...
- preparing 'RcppConcaveman':
√ checking DESCRIPTION meta-information ...
- cleaning src
- installing the package to process help pages
-----------------------------------
- installing *source* package 'RcppConcaveman' ...
** using staged installation
** libs
C:/Program Files/R/R-3.6.0/Rtools/mingw_64/bin/g++ -I"C:/PROGRA~1/R/R-36~1.0/include" -DNDEBUG -I../inst/include/ -I"C:/Users/saram/OneDrive/Documents/R/win-library/3.6/Rcpp/include" -O2 -Wall -mtune=generic -c RcppConvaveman.cpp -o RcppConvaveman.o
sh: C:/Program: No such file or directory
make: *** [C:/PROGRA~1/R/R-36~1.0/etc/x64/Makeconf:215: RcppConvaveman.o] Error 127
ERROR: compilation failed for package 'RcppConcaveman'
- removing 'C:/Users/saram/AppData/Local/Temp/RtmpGKAlVl/Rinst3d384941dc4/RcppConcaveman'
-----------------------------------
ERROR: package installation failed
Errore: Failed to install 'lidRplugins' from GitHub:
Failed to install 'unknown package' from Git:
System command 'Rcmd.exe' failed, exit status: 1, stdout + stderr (last 10 lines):
E> * installing *source* package 'RcppConcaveman' ...
E> ** using staged installation
E> ** libs
E> C:/Program Files/R/R-3.6.0/Rtools/mingw_64/bin/g++ -I"C:/PROGRA~1/R/R-36~1.0/include" -DNDEBUG -I../inst/include/ -I"C:/Users/saram/OneDrive/Documents/R/win-library/3.6/Rcpp/include" -O2 -Wall -mtune=generic -c RcppConvaveman.cpp -o RcppConvaveman.o
E> sh: C:/Program: No such file or directory
E> make: *** [C:/PROGRA~1/R/R-36~1.0/etc/x64/Makeconf:215: RcppConvaveman.o] Error 127
E> ERROR: compilation failed for package 'RcppConcaveman'
E> * removing 'C:/Users/saram/AppData/Local/Temp/RtmpGKAlVl/Rinst3d384941dc4/RcppConcaveman'
E> -----------------------------------
E> ERROR: package installation failed
>
Jean-Romain
commented
4 years ago You don't have a C++ compiler. See the README
sara-marson
commented
4 years ago Thanks for your answer, Jean. The problem is that the RcppConvaveman package does not compile, I don't know how to do, I mean what step to do in practice. What do you mean with "You don't have a C++ compiler"? Now I have this failure message:
ERROR: package installation failed
Errore: Failed to install 'lidRplugins' from GitHub:
Failed to install 'unknown package' from Git:
System command 'Rcmd.exe' failed, exit status: 1, stdout + stderr (last 10 lines):
E> ^
E> RcppConvaveman.cpp:25:20: error: expected ';' before 'i'
E> for (auto i = 0; i < n; i++)
E> ^
E> RcppConvaveman.cpp:25:20: error: 'i' was not declared in this scope
E> make: *** [C:/PROGRA~1/R/R-36~1.0/etc/x64/Makeconf:215: RcppConvaveman.o] Error 1
E> ERROR: compilation failed for package 'RcppConcaveman'
E> * removing 'C:/Users/saram/AppData/Local/Temp/RtmpG2qRq2/Rinst1ddc321d3b8c/RcppConcaveman'
E> -----------------------------------
E> ERROR: package installation failed
You have an old version of R and your C++ compiler is not compiling in C++11 by default. I updated the RcppConcaveman package to force C++11 compilation. Try to reinstall RcppConcaveman. It should work.
devtools::install_github("Jean-Romain/RcppConcaveman")ok, I installed RcppConcaveman correctly. Now, when I install lidRplugins, I have this error with the package 'velox'
Installing 32 packages: assertive, fpc, velox, glue, sp, digest, shiny, crosstalk, manipulateWidget, rlang, units, assertive.base, assertive.properties, assertive.types, assertive.numbers, assertive.strings, mclust, DEoptimR, assertive.datetimes, assertive.files, assertive.sets, assertive.matrices, assertive.models, assertive.data, assertive.data.uk, assertive.data.us, assertive.reflection, assertive.code, flexmix, prabclus, diptest, robustbase
Installing packages into ‘C:/Users/saram/OneDrive/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Errore: Failed to install 'lidRplugins' from GitHub:
(contertito da avviso) package ‘velox’ is not available (for R version 3.6.0)
Well that is a real issue. The package velox is no longer on CRAN. https://cran.r-project.org/web/packages/velox/ (removed a week ago). I changed lidRplugins to suggest velox so you will be able to install it without velox but some function will be slow and won't work. You can also install it from github https://github.com/hunzikp/velox
sara-marson
commented
4 years ago Super! Thanks a lot, Jean, I did it.
Hello,
I am trying to install lidRplugins for R 3.5.1 I receive a failure message. At the same time, I successfully installed lidR 2.0 from github in the same environment. Environment info: R 3.5.1 Rtools 3.5 (it is the newest one as far as I can see here https://cran.r-project.org/bin/windows/Rtools/) Windows 10 x64
This is a log message in R:
Regards :)