Scoring and comparing the results

[jongseo-park]

Hi,

Thank you for developing nice tool.

I have three peptide sequences expected to bind a same receptor.

I performed protein-peptide docking using colabdock for those peptides, and finally I got several promising results.

And next, I want to compare those protein-peptide complexes based on the score.

In the result of colabdock, only the interface pTM values were provided.

I was wondering whether I could compare these i_pTM values for different docking scenarios to evaluate the docking results,

or is there any other scores for assessing the docking result ?

Sincerely,

Jongseo.

[JeffSHF]

Hi, there. I’m not sure if it's reasonable to compare the ipTM scores of docking results derived from different complexes. Maybe you can make selection according to number of contacts or some other properties you want.

If you have further questions, feel free to leave comments.