JeremyLGauthier / PHyRAD

Pipeline to perform phylogenetic analyses from HyRAD data
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Missing Perl script in shell script popHyRAD.sh #1

Open augustinaloewenstein opened 3 months ago

augustinaloewenstein commented 3 months ago

Dear Jeremy Gauthier,

We would like to use your popHyRAD.sh script for the analysis of our HyRAD data in the context of population genetics. However, we were unable to find the Perl script referenced in line 53 (./scripts/fastaselect.pl), as the folder seems to be missing in the GitHub repo.

Could you please help us with this issue?

Kind regards,

Augustina Löwenstein Natural History Museum Vienna (NHMW)

JeremyLGauthier commented 3 months ago

Dear Augustina Löwenstein,

Indeed, it's an oversight on my part. I've just added it.

Thank you very much, it makes me happy that someone is using my pipeline! This pipeline is a bit homemade I admit, we're currently trying to make it more user-friendly.

If you have any questions or need any help, don't hesitate to ask me.

Best regards. Jeremy

-- Dr Jérémy Gauthier Chargé de Recherche Muséum Cantonal des Sciences Naturelles Lausanne, Suisse http://www.zoologie.vd.ch/museum-cantonal-des-sciences-naturelles/ museum email : @. @.> perso email : @.***

Le mer. 12 juin 2024 à 10:51, augustinaloewenstein @.***> a écrit :

Dear Jeremy Gauthier,

We would like to use your popHyRAD.sh script for the analysis of our HyRAD data in the context of population genetics. However, we were unable to find the Perl script referenced in line 53 (./scripts/fastaselect.pl), as the folder seems to be missing in the GitHub repo.

Could you please help us with this issue?

Kind regards,

Augustina Löwenstein Natural History Museum Vienna (NHMW)

— Reply to this email directly, view it on GitHub https://github.com/JeremyLGauthier/PHyRAD/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHFXLUW2LWYDWG7G6LGSG53ZHADZDAVCNFSM6AAAAABJF4S4B2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGM2DQMJZG44DCMI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

augustinaloewenstein commented 3 months ago

Dear Jeremy,

thank you very much for your quick response and your pipeline in general! We will try it out and see how far we come.

All the best, Augustina