TSSV fails with verbose output

[agynna]

When running TSSV with verbose output (--dir option), it performs the task but fails upon closing the verbose output files. Commenting out line 635 in tssv.py gets rid of the error.

Example command: fdstools tssv --dir results/example-2800M/ --indel-score 2 --mismatches 0.1 --num-threads 2 data/library.txt data/input.fastq > /dev/null

Terminal output:

marker  unique_seqs     tPaired fPaired rPaired tLeft   fLeft   rLeft   tRight  fRight  rRight                          
[7 lines retracted]

total reads     554718                                                                                                  
unrecognised reads      25306                                                                                           
usage: fdstools tssv [-h] [-v] [-d] [-F FORMAT] [-R FILE] [-L N] [-D DIR]                                                                    
                     [-T THREADS] [-X] [-m MISMATCHES] [-n N] [-a N] [-B]                                                                    
                     [-M ACTION]                                                                                                             
                     LIBRARY [IN] [OUT]                                                                                 
fdstools tssv: error: too many values to unpack (expected 2)

All output files are created and have the expected content.

Cheers, Arvid

[Jerrythafast]

Thanks for reporting this Arvid! (And yay, first issue on Github :) ) I have pushed a fix to master, which will make its way into the next release soon.

[agynna]

An exemplary quick bugfix! I can confirm it works now.

[Jerrythafast]

Excellent! Thanks again :)