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JervenBolleman / FALDO-paper

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Write paragraphs for main paper #2

Open JervenBolleman opened 12 years ago

JervenBolleman commented 12 years ago

We need from each sub-group is a contribution of 2-3 paragraphs describing your group's hackathon successes and ongoing activities. Also (to save Mark look-up time) please list all authors from your sub-group in that document.

rjpbonnal commented 12 years ago

ok we wrote the wiki following this idea https://github.com/dbcls/bh12/wiki/Cufflinks-rdf

peterjc commented 10 years ago

Presumably this issue was a reminder that we needed to contribute a FALDO paragraph to the BioHackathon 2013 writeup? Was that done (and can we close this issue)?

JervenBolleman commented 10 years ago

Was not done

On Tue, Nov 19, 2013 at 4:39 PM, Peter Cock notifications@github.comwrote:

Presumably this issue was a reminder that we needed to contribute a FALDO paragraph to the BioHackathon 2013 writeup? Was that done (and can we close this issue)?

— Reply to this email directly or view it on GitHubhttps://github.com/JervenBolleman/FALDO-paper/issues/2#issuecomment-28799957 .

Jerven Bolleman me@jerven.eu

peterjc commented 10 years ago

OK... so how about something like this?:

During the 2012 BioHackathon [adjust style to match rest of report], it was recognised that a common schema ontology was desirable for the Semantic Web integration of sequence annotation across multiple databases. In depth group discussions including bioinformatics software developers and major database representatives identified common core needs in defining locations on biological sequences (both nucleic and protein). This produced a draft specification for the Feature Annotation Location Description Ontology (FALDO), and proof of principle data conversion tools. This work continued at the 2013 BioHackathon, with a specific focus on ensuring that all the existing annotations in the INSDC feature tables could be converted into RDF triples using FALDO, and a formal publication (Bolleman et al. 2013/2014).