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JervenBolleman / FALDO-paper

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Address circular genomes #3

Closed cmungall closed 10 years ago

cmungall commented 11 years ago

I think the bacterial folks would be most happy if you address circular genomes, even if it is just to say that it's currently underspecified or not supported, but possible in the future.

peterjc commented 11 years ago

Examples of features wrapping the origin of circular genomes are on the TODO list, so in that sense we'll cover this.

However, we're just going to be pointing at a reference genome accession, and I don't think annotating that genome as circular is within the (current) FALDO scope.

peterjc commented 10 years ago

There is now a circular (phage) genome example in the main text - is this enough or should we talk about potential additional non-FALDO triples which could explicitly saying the reference is a circular genome? How does DDBJ do this now?

peterjc commented 10 years ago

I'm closing this given we have the "Protein II" gene example spanning the original of a circular phage genome.