JetBrains-Research / jbr

JBR Genome Browser
https://doi.org/10.1093/bioinformatics/btab376
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Support a convenient way to load BED track into autocompletion. #168

Open iromeo opened 3 years ago

iromeo commented 3 years ago

E.g. I have 50 BED tracks and I'm interested in bed entry names from one of tracks. Possible use cases: 1) load bed entry names into auto-completion. It is not reasonable to load all names from 50 tracks, because

2) show track regions + some flanking region in multiple location view. Currently BED track names are already in autocompletion, but for complex track names (e.g. HCS Consensus Methpipe our pipeline [1:200:1], M>20%) completion list will contain slightly different track name due to escaping, etc. + flanking not supported.

iromeo commented 1 year ago
  1. as alternative to '1' show some special panel for navigation in track, there could be list of all regions + autocompletion. E.g. if I have 21 regions on different chromosomes - I'd like to iterate over them and look manually. Multiple regions view not very convenient here because I'd like to better see region neighbourhood.