Initial Bam Support - Githubissues

Initial Bam files Support:

[x] Load indexed bam file in JBR
[x] Render read segments and arrange them effectively
[x] Color reads depending on the strand (orientation)
[x] Show mismatches (nucleotides), insertions, deletions
[x] Show coverage track
[x] Support SAM files, will be useful in tests
[x] Allow user to make a choice when opening not indexed BAM/SAM/CRAM files: sort & index, skip, load in memory
[x] Special view mode for PE reads
[x] Save BAM file to session
[x] Restore some options when loading IGV session
[x] Option to show read names Subtask of #6

JetBrains-Research / jbr