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JetBrains-Research / jbr

JBR Genome Browser
https://doi.org/10.1093/bioinformatics/btab376
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Load from ENCODE dialog hangs #228

Closed iromeo closed 1 year ago

iromeo commented 1 year ago

E.g. request ctcf chip-seq monocytes

Exception in thread "AWT-EventQueue-0" java.lang.ClassCastException: class com.google.gson.JsonArray cannot be cast to class com.google.gson.JsonPrimitive (com.google.gson.JsonArray and com.google.gson.JsonPrimitive are in unnamed module of loader 'app')
    at com.google.gson.JsonObject.getAsJsonPrimitive(JsonObject.java:197)
    at org.jetbrains.bio.browser.encode.EncodeUtil.toEncodeFile(EncodeUtil.kt:157)
    at org.jetbrains.bio.browser.encode.EncodeUtil.queryFiles$jbr_encode_plugin(EncodeUtil.kt:134)
    at org.jetbrains.bio.browser.encode.EncodeUtil$queryFiles$1.invokeSuspend(EncodeUtil.kt)
    at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:33)
    at io.ktor.util.pipeline.SuspendFunctionGun.resumeRootWith(SuspendFunctionGun.kt:191)
    at io.ktor.util.pipeline.SuspendFunctionGun.loop(SuspendFunctionGun.kt:147)
    at io.ktor.util.pipeline.SuspendFunctionGun.access$loop(SuspendFunctionGun.kt:15)
    at io.ktor.util.pipeline.SuspendFunctionGun$continuation$1.resumeWith(SuspendFunctionGun.kt:93)
    at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:46)
    at io.ktor.util.pipeline.SuspendFunctionGun.resumeRootWith(SuspendFunctionGun.kt:191)
    at io.ktor.util.pipeline.SuspendFunctionGun.loop(SuspendFunctionGun.kt:147)
    at io.ktor.util.pipeline.SuspendFunctionGun.access$loop(SuspendFunctionGun.kt:15)
    at io.ktor.util.pipeline.SuspendFunctionGun$continuation$1.resumeWith(SuspendFunctionGun.kt:93)
    at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:46)
    at io.ktor.util.pipeline.SuspendFunctionGun.resumeRootWith(SuspendFunctionGun.kt:191)
    at io.ktor.util.pipeline.SuspendFunctionGun.loop(SuspendFunctionGun.kt:147)
    at io.ktor.util.pipeline.SuspendFunctionGun.access$loop(SuspendFunctionGun.kt:15)
    at io.ktor.util.pipeline.SuspendFunctionGun$continuation$1.resumeWith(SuspendFunctionGun.kt:93)
    at kotlin.coroutines.jvm.internal.BaseContinuationImpl.resumeWith(ContinuationImpl.kt:46)
    at kotlinx.coroutines.DispatchedTask.run(DispatchedTask.kt:106)
    at kotlinx.coroutines.scheduling.CoroutineScheduler.runSafely(CoroutineScheduler.kt:571)
    at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.executeTask(CoroutineScheduler.kt:750)
    at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.runWorker(CoroutineScheduler.kt:678)
    at kotlinx.coroutines.scheduling.CoroutineScheduler$Worker.run(CoroutineScheduler.kt:665)