JetBrains-Research / jbr

JBR Genome Browser
https://doi.org/10.1093/bioinformatics/btab376
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Session export in IGV format doesn't include `type` tag in resource section #246

Open iromeo opened 1 year ago

iromeo commented 1 year ago

IGV 2.16.2 also includes type tag. E.g.:

    <Resources>
        <Resource path="f2/foo.bed" type="bed"/>
        <Resource path="f1/foo.bed" type="bed"/>
        <Resource path="https://encode-public.s3.amazonaws.com/2021/05/05/7d7f2892-7ccd-46b3-a073-659555bf7cd3/ENCFF637HNV.bigBed" type="bigbed"/>
        <Resource path="https://encode-public.s3.amazonaws.com/2021/05/05/d7bfbe1f-082e-4455-a05e-354609ae0a5f/ENCFF783FUP.bigWig" type="bigwig"/>
        <Resource path="https://encode-public.s3.amazonaws.com/2021/05/05/fcb738c7-efaa-4b6a-bc4a-7fc2d408bafa/ENCFF789OLP.bed.gz" type="bed"/>
        <Resource path="f1/foo1.bed" type="bed"/>
    </Resources>

At the moment, JBR doesn't save such field into theResource tag, but such sessions could be sucessfully opened in latest IGV 2.16.2

So questions arise: