Use deeptools for BAM visualisation

JetBrains-Research / scasat-smk-pipeline

Single cell ATAC-Seq Snakemake pipeline

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Closed olegs closed 5 years ago

olegs commented 5 years ago

Please consider using deeptools for converting BAM to BigWig instead of more rules.

dievsky commented 5 years ago

bam2bw is now done with deeptools.