Detection of working directory for resolving relative path

JetBrains-Research / snakecharm

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

MIT License

61 stars 7 forks source link

Open dakochik opened 2 years ago

dakochik commented 2 years ago

In in the following project:

+ - - projectDirectory
|      + - - keys.yml
|      + - - smk
|            + - - Snakefile

If we run Snakefile from smk directory

# Snakefile

configfile: '../keys.yml'

Snakemake will run it successfully, but plugin highlights 'keys.yml' as unresolved reference.