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JetBrains-Research / snakecharm

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
MIT License
61 stars 7 forks source link

Unresolved reference 'snakemake' #511

Open iquasere opened 8 months ago

iquasere commented 8 months ago

I never got, on my MacBook Pro M2, snakemake recognized. Is this working as designed? The pipeline runs fine.

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SnakeCharm version: 2023.2.1

iromeo commented 6 months ago

Hi, as a workaround, you could add manually import snakemake line, it will not affect pipeline, but will help with static code analysis. Snakemake executes a snakemake file in a special environment, where some objects are inserted dynamically, so snakemake module will be available on runtime, but SnakeCharm codeInsight engine doesn't emulates this at the moment.

iromeo commented 5 months ago

@iquasere Is it .smk or Snakefile or just some .py file with wrapper impl?

iquasere commented 5 months ago

Thank you for the answer, @iromeo !

This is happening only for the .py scripts, although the .smk files have another problem, where it doesn't recognize stuff coming from the common.smk script.

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Still, the most annoying is in the *.py files.

Hi, as a workaround, you could add manually import snakemake line

This turned all the errors into warnings, which is better. I guess it wouldn't make sense to have a params attribute in snakemake's __init__

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