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JetBrains-Research / washu

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
https://artyomovlab.wustl.edu/aging
MIT License
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Cannot run signals.sh: mkdir: cannot create directory #65

Closed iromeo closed 6 years ago

iromeo commented 6 years ago 
Local tasks WASHU_PARALLELISM=20
Batch signals /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams 150 /mnt/stripe/bio/experiments/signal_experiment_new/regions /mnt/stripe/bio/genomes/hg19/hg19.chrom.sizes /mnt/stripe/bio/experiments/configs/Y20O20/benchmark/benchmark/H3K27ac/span/co$
sensus/H3K27ac_span_weak_consensus.bed
mkdir: cannot create directory ‘/mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150’: Permission denied
LOCAL running TASK: /tmp/qsub.OsARl7XUKwsY.sh LOG: /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150/tags_bw_logs/OD1_k27ac_hg19_unique_150.log
/mnt/stripe/washu/parallel/util/util.sh: line 65: /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150/tags_bw_logs/OD1_k27ac_hg19_unique_150.log: No such file or directory
LOCAL running TASK: /tmp/qsub.XBUeBoIJQrxM.sh LOG: /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150/tags_bw_logs/input_150.log
/mnt/stripe/washu/parallel/util/util.sh: line 65: /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150/tags_bw_logs/input_150.log: No such file or directory
LOCAL running TASK: /tmp/qsub.IyiHvG7Js1xt.sh LOG: /mnt/stripe/bio/experiments/aging/chipseq/k27ac/k27ac_20vs20_redo_bams/150/tags_bw_logs/OD10_k27ac_hg19_150.log
....
/mnt/stripe/washu/downstream/signals/signals.sh: line 92: cd: /mnt/stripe/bio/experiments/aging/chipseq/k27me3/k27me3_20vs20_bams/150: No such file or directory
LOCAL running TASK: /home/user/tmp/job31314/qsub.P2VJOnUrA537.sh LOG: /mnt/stripe/bio/experiments/aging/chipseq/k27me3/k27me3_20vs20_bams/150//weak_consensus/H3K4me1_span_YD_weak_consensus/H3K4me1_span_YD_weak_consensus_signal.log
/mnt/stripe/washu/parallel/util/util.sh: line 65: /mnt/stripe/bio/experiments/aging/chipseq/k27me3/k27me3_20vs20_bams/150//weak_consensus/H3K4me1_span_YD_weak_consensus/H3K4me1_span_YD_weak_consensus_signal.log: No such file or directory
/mnt/stripe/washu/downstream/signals/signals.sh: line 242: cd: /mnt/stripe/bio/experiments/aging/chipseq/k27me3/k27me3_20vs20_bams/150//weak_consensus/H3K4me1_span_YD_weak_consensus: No such file or directory
mkdir: cannot create directory ‘/mnt/stripe/bio/experiments/aging/chipseq/k27me3/k27me3_20vs20_bams/150’: Permission denied
....
iromeo commented 6 years ago

script fixed