Signal processing fails to calculate frip

JetBrains-Research / washu

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing

https://artyomovlab.wustl.edu/aging

MIT License

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Signal processing fails to calculate frip #66

Closed iromeo closed 6 years ago

iromeo commented 6 years ago

E.g see /mnt/stripe/bio/experiments/configs/Y20O20/signal_experiment/H3K27ac/150/weak_consensus/H3K27ac_span_OD_weak_consensus/H3K27ac_span_OD_weak_consensus_signal.log


...
Processing FRIP normalization
cannot use label indexing with a null key
list index out of range
``

iromeo commented 6 years ago

Seems it is due to missing input column in /mnt/stripe/bio/experiments/configs/Y20O20/signal_experiment/H3K27ac/150//weak_consensus/H3K27ac_span_OD_weak_consensus/H3K27ac_span_OD_weak_consensus.tsv