JetBrains-Research / washu

Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
https://artyomovlab.wustl.edu/aging
MIT License
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BedMetrics: support dataset *.yaml as failed tracks #67

Open iromeo opened 6 years ago

iromeo commented 6 years ago

At the moment we use .csv format which isn't related to our internal formats, like .yaml datasets, etc, so it gives user freedom to use it outside our project scope. In 'epigenome' project FailedTracksTableReport tools allows to generate proper .csv table for given .yaml dataset. It will be more convenient for our project to support .yaml file directly in order to remove duplicated failed tracks annotations + not to update .csv after .yaml file has been changed. I suggest to support both .yaml and *.csv tables here.