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JetBrains-Research
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washu
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
https://artyomovlab.wustl.edu/aging
MIT License
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Disk quota exceeded on Washu cluster
#28
olegs
closed
6 years ago
3
sicer.sh produces too many files duplicated files
#27
olegs
opened
6 years ago
5
#23 consensus
#26
PetrTsurinov
closed
6 years ago
1
Macs2 error on washu
#25
olegs
closed
6 years ago
4
Washu testing images
#24
olegs
closed
5 years ago
2
Create script for constructing consensus of input peaks files
#23
PetrTsurinov
closed
6 years ago
1
Implement functions for peaks plots creation and create report scripts based on them
#22
PetrTsurinov
closed
6 years ago
0
#22 Peaks plots scripts
#21
PetrTsurinov
closed
6 years ago
2
remove_duplicates.sh aborts pipeline
#20
iromeo
closed
7 years ago
2
MAnorm freezes processing many replicates on WashU cluster
#19
olegs
closed
5 years ago
2
Support methylation in signal_bw
#18
olegs
closed
6 years ago
1
MemoryError
#17
olegs
closed
6 years ago
1
picard tools failed to create temp folder
#16
olegs
closed
6 years ago
1
bam2tags failure: /tmp Disk quota exceeded
#15
olegs
closed
6 years ago
7
MACS2: ValueError: cannot resize this array: it does not own its data
#14
iromeo
closed
6 years ago
9
bowtie.sh creates files with .bam.bam extension
#13
atsky
closed
7 years ago
2
Add diffreps as differential peak caller to chipseq_diff.sh
#12
olegs
closed
6 years ago
1
Macs2LogsTest.test_process_macs2_logs test is flaky
#11
iromeo
closed
6 years ago
2
pipeline_chipseq fails
#10
atsky
closed
7 years ago
0
Tests on chipseq_pipeline
#9
olegs
closed
6 years ago
3
RSEG error BED not sorted
#8
olegs
closed
7 years ago
0
Add SICER as peak caller step
#7
olegs
closed
7 years ago
0
Add Zinbra as a peak calling step
#6
olegs
closed
7 years ago
1
Compute NRF, PBC1, PBC2 for ChIP-Seq alignment
#5
olegs
closed
6 years ago
4
16Gb is not enough for Bowtie step
#4
olegs
closed
7 years ago
0
Rna seq pipeline implemented
#3
konsolerr
closed
8 years ago
0
Build MACS2 model graphics automatically
#2
olegs
closed
7 years ago
1
metapeaks fails with bedtools v 2.26.0
#1
olegs
closed
8 years ago
0
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