Jfortin1 ComBatHarmonization issues

Jfortin1 / ComBatHarmonization

Harmonization of multi-site imaging data with ComBat

268 stars 107 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How to save a pre-trained combat model?

#46 eliauk07yz opened 10 months ago
0
Unable to install R package

#45 GHarmata opened 1 year ago
0
Edits to MATLAB code: 1) add missing data values functionality, 2) substantial speed optimizations in non-parametric adjustments

#44 jocwilliams opened 1 year ago
1
How to deal with .nii files directly?

#43 xiuwang0614 opened 1 year ago
0
Harmonization for multi-study project where each study has multiple sites

#42 pauldhami opened 1 year ago
0
Use of ComBat when I have travelling subjects

#41 jagruti8 opened 2 years ago
0
[matlab] need to raise error if there is only 1 batch, otherwise it produces incorrect output

#40 kjamison opened 2 years ago
0
[matlab]there are rows with constant values across samples. Remove these rows and rerun ComBat

#39 lx123-j opened 2 years ago
0
Neurocombat on 3D volumes

#38 shifdz opened 2 years ago
1
Detection of single batch in one site so var() calculation is not needed

#37 judychen7652 opened 2 years ago
0
Working with voxel-wise data

#36 Melissa1909 closed 2 years ago
1
Error using combat in Matlab, error about vertcat although dimensions of input are right

#35 narzouni closed 2 years ago
2
train/test in R

#34 Tibetan-eagle opened 3 years ago
1
How can I detect overcorrection?

#33 Lux91 closed 2 years ago
1
how to use combat when predicting depression

#32 Hanxiaoyi2016 closed 3 years ago
0
ComBat parametric adjustment returning NANs in Matlab

#31 leotozzi88 opened 3 years ago
3
Python wrapper for R implementation

#30 Terf closed 3 years ago
1
[R] remotes::install_github fails: BiocParallel isn't in CRAN

#29 WillForan closed 3 years ago
0
DESCRIPTION: remotes bioc::BiocParallel

#28 WillForan closed 3 years ago
1
Possible to use parallelization to speed up non-parametric estimation in R?

#27 dpagliaccio closed 3 years ago
1
[Matlab code] NaN matrix returned when input has a row with batch-wise constant values

#26 Jfortin1 closed 3 years ago
1
mod.mean in neuroCombatFromTraining()

#25 anlijuncn closed 3 years ago
1
Call neuroCombat without ref_batch

#24 RocaVincent closed 3 years ago
3
train/test matlab implementation

#23 neurominer-git opened 4 years ago
4
batch needed to be ordered

#22 sreevalsansmenon closed 4 years ago
2
aprior formular

#21 zh1peng closed 4 years ago
1
[Matlab] Handling of missing values

#20 Jfortin1 opened 4 years ago
1
[Python] Handling of missing values

#19 Jfortin1 opened 4 years ago
2
Testing Python results against Matlab and R results

#18 Jfortin1 closed 4 years ago
1
[Python] Writing readme file

#17 Jfortin1 closed 3 years ago
0
[Python] Dividing by zeros in standardize_accros_features function

#16 Jfortin1 closed 3 years ago
3
Non-parametric implementation in Python

#15 Jfortin1 closed 4 years ago
3
Applying ComBat on single feature

#14 MStarmans91 closed 4 years ago
5
Fit ComBat on training set and apply fitted ComBat on test set

#13 anlijuncn closed 4 years ago
4
Non-parametric form by Matlab

#12 Yingping-LI closed 4 years ago
2
Plotting prior and EB distributions

#11 jaspushe closed 4 years ago
1
harmonize DTI files

#10 chen2mg closed 5 years ago
2
Nonparametric version of ComBat in R

#9 Jfortin1 closed 5 years ago
1
Nonparametric implementation of ComBat in Matlab

#8 Jfortin1 closed 5 years ago
1
Is it possible to use ComBat in native space?

#7 tongluobing closed 5 years ago
2
Error in solve.default(t(design) %*% design)?

#6 jlhanson5 closed 6 years ago
4
Typo in matlab implementation tutorial

#5 lindenmp closed 6 years ago
1
Improving performance using:

#4 richardbeare closed 6 years ago
1
Correct batch effect of test data

#3 siyhust closed 6 years ago
1
Error in apply(data, 1, sd) : dim(X) must have a positive length

#2 jlhanson5 closed 6 years ago
2
ComBat in large sample size

#1 dbergeba closed 6 years ago
9