JhuangLab / CytoTree

A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
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How to remove clusters/Cluster subsets #3

Open alhadjil opened 3 years ago

alhadjil commented 3 years ago

Hi,

thank you for this very nice package! It works nicely and the vignette has been really well written and instrumental in implementing the package.

I have some clusters I would like to remove so I can focus on a certain cell population (e.g. T cells etc). How do I remove the unwanted clusters? The function subsetCYT is meant to subset cells and not clusters as I understood it - is there a way to do that for clusters as well?

Thank you!