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JiYuanFeng / AMOS

AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation
Apache License 2.0
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about data processing #8

Closed Devil-Ideal closed 11 months ago

Devil-Ideal commented 11 months ago

When processing ct data, run "nnUNet_convert_decathlon_task -i ./DATASET/AMOS22_raw/AMOS22_raw_data/Task01_AMOS_CT nnUNet_plan_and_preprocess -t 1", you will get two files: nnUNetData_plans_v2.1_stage0 and nnUNetData_plans_v2.1_stage1, but I found that there are 600 files in nnUNetData_plans_v2.1_stage0, including 300 .npz files and 300 .pkl files, which is consistent with the number of CT images, but there are only 326 files in total in nnUNetData_plans_v2.1_stage1. Is this normal?

Devil-Ideal commented 11 months ago

I think something is wrong because I processed it twice and found that the number of data inside the nnUNetData_plans_v2.1_stage1 folder is different, but still not 600 files

Devil-Ideal commented 11 months ago

I did it again from scratch and now the data seems correct