hello
ive tried the TEMP_absence.sh (bash ../scripts/TEMP_Absence.sh -i ./test_chromosome.sorted.bam -s ../scripts -r ./test_TE_annotation.bed -t ./dm3_chr2L.2bit)
on test data and i got this error
Error: Type checker found wrong number of fields while tokenizing data line.
Perhaps you have extra TAB at the end of your line? Check with "cat -t"
i searched and found it might be caused by bedtools an i downgraded bedtool from 2.30 to 2.29 to 2.27 to 2.26 and still have the same error, but when i downgraded it to 2.25 i got a new error
Can't open test_chromosome.excision.cluster.rpmk.refined.bp.sfcp since No such file or directory
can anyone please help me
hello ive tried the TEMP_absence.sh (
bash ../scripts/TEMP_Absence.sh -i ./test_chromosome.sorted.bam -s ../scripts -r ./test_TE_annotation.bed -t ./dm3_chr2L.2bit)on test data and i got this error Error: Type checker found wrong number of fields while tokenizing data line. Perhaps you have extra TAB at the end of your line? Check with "cat -t" i searched and found it might be caused by bedtools an i downgraded bedtool from 2.30 to 2.29 to 2.27 to 2.26 and still have the same error, but when i downgraded it to 2.25 i got a new errorCan't open test_chromosome.excision.cluster.rpmk.refined.bp.sfcp since No such file or directorycan anyone please help me