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JialiUMassWengLab / TEMP

TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data
GNU General Public License v2.0
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Error when running TEMP #9

Open simoncchu opened 7 years ago

simoncchu commented 7 years ago

Hi,

I get this error when running "TEMP_Insertion.sh":

ERROR: Received illegal bin number 262143 from getBin call. ERROR: Unable to add record to tree.

Possible reason for causing this?

Best, Chong

JialiUMassWengLab commented 7 years ago

Hi Chong,

This is quite unusual. I've never seen error messages like this and I don't think there's a "getBin" call in the program. Can you provide more details?

Jiali

On Fri, Oct 21, 2016 at 8:08 AM, Reedwarbler notifications@github.com wrote:

Hi,

I get this error when running "TEMP_Insertion.sh":

ERROR: Received illegal bin number 262143 from getBin call. ERROR: Unable to add record to tree.

Possible reason for causing this?

Best, Chong

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simoncchu commented 7 years ago

@JialiUMassWengLab

Sorry for the late reply. I reinstalled TEMP on another server, and this error doesn't show up now. However, it shows another error: "Illegal division by zero at ../scripts/pickOverlapPair.in.pl line 84."

Any suggestion for this? I am running the test data in your mannual. Thank you.

simoncchu commented 7 years ago

@JialiUMassWengLab

It seems the "getBin" error happen again. Which version of bedtools do you recommend to use? I use the latest one.

simoncchu commented 7 years ago

@JialiUMassWengLab , I tried the old version of betools and it works. But met another error: "Error: tmp is an empty file." Any suggestion?

rosbashlab commented 6 years ago

I have noticed that i get this error "Error: tmp is an empty file.", when I run TEMP on servers that do not have adequate memory.

vmerel commented 6 years ago

@Reedwarbler

Hi,

How did you solve this error message ?

Sorry for the late reply. I reinstalled TEMP on another server, and this error doesn't show up now. However, it shows another error: "Illegal division by zero at ../scripts/pickOverlapPair.in.pl line 84."

I've got the same one when running the test data.

Thank you.

simoncchu commented 6 years ago

I didn't solve the problem, and preferred other tools. @vmerel