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JiangYuLab / CNVcaller

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Error: cannot read primaryCNVR file primaryCNVR #16

Open zhangqiong151 opened 2 years ago

zhangqiong151 commented 2 years ago

sorry to bother you, when I run CNV.Discovery.sh, it reminds me that the file "1500_mean_20.00_SD_29.48_sex_1" not find, I don't understand why.

Use of uninitialized value $sd in numeric gt (>) at 2.1.CNVDiscoveryMerge.pl line 72, line 67. 0.136449659348978 /RD_normalized/1500_mean_20.00_SD_29.48_sex_1 0.35 /RD_normalized/1500_mean_20.00_SD_29.48_sex_1 file not found length() used on @tmp_start_array (did you mean "scalar(@tmp_start_array)"?) at CNVcaller/bin/2.2.CNVRRedundancy.pl line 48. length() used on @tmp (did you mean "scalar(@tmp)"?) at CNVcaller/bin/2.2.CNVRRedundancy.pl line 48 Error: cannot read primaryCNVR file primaryCNVR.

afurches commented 2 months ago

Although the analysis I ran with CNV.Discovery.sh seemed to complete successfully, I also received the following error message and the end of the .err file:

length() used on @tmp_start_array (did you mean "scalar(@tmp_start_array)"?) at /CNVcaller/bin/2.2.CNVRRedundancy.pl line 48.
length() used on @tmp (did you mean "scalar(@tmp)"?) at /CNVcaller/bin/2.2.CNVRRedundancy.pl line 48.