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Jianwei-Zhang / LIMS

Laboratory Information Management System
https://jianwei-zhang.github.io/LIMS/
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creating new genome fails #3

Open kavonrtep opened 3 years ago

kavonrtep commented 3 years ago

creating New Genome from General/New Genome failes. from var/log/apache2/error.log:

[Fri Aug 13 09:21:43 2021] genomeSave.cgi: DBD::mysql::st execute failed: Incorrect integer value: '' for column 'id' at row 1 at /var/www/cgi-bin/lims/genomeSave.cgi line 439, line 58. [Fri Aug 13 09:21:56 2021] genomeSave.cgi: Filehandle STDOUT reopened as GEN0 only for input at /usr/share/perl5/Bio/Root/IO.pm line 268, line 58. [Fri Aug 13 09:21:56 2021] genomeSave.cgi: DBD::mysql::st execute failed: Incorrect integer value: '' for column 'id' at row 1 at /var/www/cgi-bin/lims/genomeSave.cgi line 531,

matt-shenton commented 2 years ago

I also have a similar failure here loading a new genome Thanks for your help

Matt Shenton

[Wed Apr 06 09:43:20.779318 2022] [cgi:error] [pid 5263] [client 127.0.0.1:59978] AH01215: [Wed Apr 6 09:43:20 2022] genomeSave.cg i: DBD::mysql::st execute failed: Incorrect integer value: '' for column 'id' at row 1 at /var/www/cgi-bin/lims/genomeSave.cgi line 439, <F> line 58.: /var/www/cgi-bin/lims/genomeSave.cgi, referer: http://localhost/cgi-bin/lims/index.cgi [Wed Apr 06 09:43:20.780338 2022] [cgi:error] [pid 5263] [client 127.0.0.1:59978] AH01215: [Wed Apr 6 09:43:20 2022] genomeSave.cg i: print() on closed filehandle SEQFILE at /var/www/cgi-bin/lims/genomeSave.cgi line 484, <F> line 58.: /var/www/cgi-bin/lims/genom eSave.cgi, referer: http://localhost/cgi-bin/lims/index.cgi [Wed Apr 06 09:43:20.780385 2022] [cgi:error] [pid 5263] [client 127.0.0.1:59978] AH01215: [Wed Apr 6 09:43:20 2022] genomeSave.cg i: print() on closed filehandle SEQFILE at /var/www/cgi-bin/lims/genomeSave.cgi line 484, <F> line 58.: /var/www/cgi-bin/lims/genom eSave.cgi, referer: http://localhost/cgi-bin/lims/index.cgi [Wed Apr 06 09:43:20.780435 2022] [cgi:error] [pid 5263] [client 127.0.0.1:59978] AH01215: [Wed Apr 6 09:43:20 2022] genomeSave.cg i: print() on closed filehandle SEQFILE at /var/www/cgi-bin/lims/genomeSave.cgi line 484, <F> line 58.: /var/www/cgi-bin/lims/genom eSave.cgi, referer: http://localhost/cgi-bin/lims/index.cgi

Johnsonzcode commented 2 years ago

Same error, hope to fix