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JiaoLaboratory / CRAQ

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
https://doi.org/10.1038/s41467-023-42336-w
MIT License
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Why there is no out_correct.fa file? #4

Closed xiahouzuoying closed 8 months ago

xiahouzuoying commented 8 months ago

The runAQI_out directory has files as below: image my script: perl /nfs/software/CRAQ/bin/craq -g rex.genome.fa -sms rex.fasta.gz -ngs rex_L1_clean.fa.gz,rex_L2_clean.fa.gz -avgl 60 -avgs 100 -t 40 -D output

JiaoLaboratory commented 7 months ago

the --break|-b should be "T"