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JiaweiZhuang / xESMF

Universal Regridder for Geospatial Data
http://xesmf.readthedocs.io/
MIT License
269 stars 49 forks source link

ImportError: Regrid requires PIO #83

Closed tyfolino closed 4 years ago

tyfolino commented 4 years ago

I'm unable to build a Regridder on Linux os without getting the following error:

ImportError: Regrid(filename) requires PIO and does not work if ESMF has not been built with MPI support

Suspecting a compatibility issue, I created a new python environment and went through the installation again, following the exact lines on the installation page. Running pytest produces the same error code, even with the clean environment.

Thanks for any insight.


$ conda list
# packages in environment at /home/tylerj/miniconda3/envs/xesmf_env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
attrs                     19.3.0                     py_0    conda-forge

backcall                  0.1.0                      py_0    conda-forge
bleach                    3.1.1                      py_0    conda-forge
bokeh                     1.4.0                    py37_0    conda-forge
bzip2                     1.0.8                h516909a_2    conda-forge
ca-certificates           2019.11.28           hecc5488_0    conda-forge
cartopy                   0.17.0          py37h39d8c00_1011    conda-forge
certifi                   2019.11.28               py37_0    conda-forge
cffi                      1.13.2           py37h8022711_0    conda-forge
cftime                    1.0.4.2          py37hc1659b7_0    conda-forge
chardet                   3.0.4                 py37_1003    conda-forge
click                     7.0                        py_0    conda-forge
cloudpickle               1.3.0                      py_0    conda-forge
cryptography              2.8              py37h72c5cf5_1    conda-forge
curl                      7.68.0               hf8cf82a_0    conda-forge
cycler                    0.10.0                     py_2    conda-forge
cytoolz                   0.10.1           py37h516909a_0    conda-forge
dask                      2.11.0                     py_0    conda-forge
dask-core                 2.11.0                     py_0    conda-forge
dbus                      1.13.6               he372182_0    conda-forge
decorator                 4.4.1                      py_0    conda-forge
defusedxml                0.6.0                      py_0    conda-forge
distributed               2.11.0                   py37_0    conda-forge
entrypoints               0.3                   py37_1000    conda-forge
esmf                      8.0.0           nompi_he6d0a24_5    conda-forge
esmpy                     8.0.0           nompi_py37hf0e99fa_1    conda-forge
expat                     2.2.9                he1b5a44_2    conda-forge
fontconfig                2.13.1            he4413a7_1000    conda-forge
freetype                  2.10.0               he983fc9_1    conda-forge
fsspec                    0.6.2                      py_0    conda-forge
geos                      3.8.0                he1b5a44_0    conda-forge
gettext                   0.19.8.1          hc5be6a0_1002    conda-forge
glib                      2.58.3          py37h6f030ca_1002    conda-forge
gst-plugins-base          1.14.5               h0935bb2_2    conda-forge
gstreamer                 1.14.5               h36ae1b5_2    conda-forge
hdf4                      4.2.13            hf30be14_1003    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
heapdict                  1.0.1                      py_0    conda-forge
icu                       58.2              hf484d3e_1000    conda-forge
idna                      2.9                        py_1    conda-forge
importlib_metadata        1.5.0                    py37_0    conda-forge
ipykernel                 5.1.4            py37h5ca1d4c_0    conda-forge
ipython                   7.12.0           py37h5ca1d4c_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jedi                      0.16.0                   py37_0    conda-forge
jinja2                    2.11.1                     py_0    conda-forge
jpeg                      9c                h14c3975_1001    conda-forge
json5                     0.9.0                      py_0    conda-forge
jsonschema                3.2.0                    py37_0    conda-forge
jupyter_client            6.0.0                      py_0    conda-forge
jupyter_core              4.6.3                    py37_0    conda-forge
jupyterlab                2.0.0                      py_0    conda-forge
jupyterlab_server         1.0.6                      py_0    conda-forge
kiwisolver                1.1.0            py37hc9558a2_0    conda-forge
krb5                      1.16.4               h173b8e3_0  
ld_impl_linux-64          2.33.1               h53a641e_7  
libblas                   3.8.0               14_openblas    conda-forge
libcblas                  3.8.0               14_openblas    conda-forge
libcurl                   7.68.0               hda55be3_0    conda-forge
libedit                   3.1.20181209         hc058e9b_0  
libffi                    3.2.1                hd88cf55_4  
libgcc-ng                 9.1.0                hdf63c60_0  
libgfortran-ng            7.3.0                hdf63c60_5    conda-forge
libiconv                  1.15              h516909a_1005    conda-forge
liblapack                 3.8.0               14_openblas    conda-forge
libnetcdf                 4.7.3           nompi_h9f9fd6a_101    conda-forge
libopenblas               0.3.7                h5ec1e0e_6    conda-forge
libpng                    1.6.37               hed695b0_0    conda-forge
libsodium                 1.0.17               h516909a_0    conda-forge
libssh2                   1.8.2                h22169c7_2    conda-forge
libstdcxx-ng              9.1.0                hdf63c60_0  
libtiff                   4.1.0                hc3755c2_3    conda-forge
libuuid                   2.32.1            h14c3975_1000    conda-forge
libxcb                    1.13              h14c3975_1002    conda-forge
libxml2                   2.9.9                hea5a465_1  
locket                    0.2.0                      py_2    conda-forge
lz4-c                     1.8.3             he1b5a44_1001    conda-forge
markupsafe                1.1.1            py37h516909a_0    conda-forge
matplotlib                3.1.3                    py37_0  
matplotlib-base           3.1.3            py37hef1b27d_0  
mistune                   0.8.4           py37h516909a_1000    conda-forge
more-itertools            8.2.0                    pypi_0    pypi
msgpack-python            1.0.0            py37hc9558a2_0    conda-forge
nbconvert                 5.6.1                    py37_0    conda-forge
nbformat                  5.0.4                      py_0    conda-forge
ncurses                   6.2                  he6710b0_0  
netcdf-fortran            4.5.2           nompi_h09cde99_103    conda-forge
netcdf4                   1.5.3           nompi_py37hd35fb8e_102    conda-forge
notebook                  6.0.3                    py37_0    conda-forge
numpy                     1.18.1           py37h95a1406_0    conda-forge
olefile                   0.46                       py_0    conda-forge
openssl                   1.1.1d               h516909a_0    conda-forge
owslib                    0.19.1                     py_0    conda-forge
packaging                 20.1                       py_0    conda-forge
pandas                    1.0.1            py37hb3f55d8_0    conda-forge
pandoc                    2.9.2                         0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
parso                     0.6.1                      py_0    conda-forge
partd                     1.1.0                      py_0    conda-forge
pcre                      8.44                 he1b5a44_0    conda-forge
pexpect                   4.8.0                    py37_0    conda-forge
pickleshare               0.7.5                 py37_1000    conda-forge
pillow                    7.0.0            py37hb39fc2d_0  
pip                       20.0.2                   py37_1  
pluggy                    0.13.1                   pypi_0    pypi
proj                      6.3.1                hc80f0dc_0    conda-forge
prometheus_client         0.7.1                      py_0    conda-forge
prompt_toolkit            3.0.3                      py_0    conda-forge
psutil                    5.7.0            py37h516909a_0    conda-forge
pthread-stubs             0.4               h14c3975_1001    conda-forge
ptyprocess                0.6.0                   py_1001    conda-forge
py                        1.8.1                    pypi_0    pypi
pycparser                 2.19                       py_2    conda-forge
pyepsg                    0.4.0                      py_0    conda-forge
pygments                  2.5.2                      py_0    conda-forge
pykdtree                  1.3.1           py37hc1659b7_1002    conda-forge
pyopenssl                 19.1.0                     py_1    conda-forge
pyparsing                 2.4.6                      py_0    conda-forge
pyproj                    2.5.0            py37he3cd046_1    conda-forge
pyqt                      5.9.2            py37hcca6a23_4    conda-forge
pyrsistent                0.15.7           py37h516909a_0    conda-forge
pyshp                     2.1.0                      py_0    conda-forge
pysocks                   1.7.1                    py37_0    conda-forge
pytest                    5.3.5                    pypi_0    pypi
python                    3.7.6                h0371630_2  
python-dateutil           2.8.1                      py_0    conda-forge
pytz                      2019.3                     py_0    conda-forge
pyyaml                    5.3              py37h516909a_0    conda-forge
pyzmq                     19.0.0           py37h1768529_0    conda-forge
qt                        5.9.7                h52cfd70_2    conda-forge
readline                  7.0                  h7b6447c_5  
requests                  2.23.0                   py37_0    conda-forge
scipy                     1.4.1            py37h921218d_0    conda-forge
send2trash                1.5.0                      py_0    conda-forge
setuptools                45.2.0                   py37_0  
shapely                   1.7.0            py37h5d51c17_0    conda-forge
sip                       4.19.8           py37hf484d3e_0  
six                       1.14.0                   py37_0    conda-forge
sortedcontainers          2.1.0                      py_0    conda-forge
sqlite                    3.31.1               h7b6447c_0  
tblib                     1.6.0                      py_0    conda-forge
terminado                 0.8.3                    py37_0    conda-forge
testpath                  0.4.4                      py_0    conda-forge
tk                        8.6.8                hbc83047_0  
toolz                     0.10.0                     py_0    conda-forge
tornado                   6.0.3            py37h516909a_4    conda-forge
traitlets                 4.3.3                    py37_0    conda-forge
urllib3                   1.25.7                   py37_0    conda-forge
wcwidth                   0.1.8                      py_0    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.34.2                   py37_0  
xarray                    0.15.0                     py_0    conda-forge
xesmf                     0.2.2                      py_0    conda-forge
xorg-libxau               1.0.9                h14c3975_0    conda-forge
xorg-libxdmcp             1.1.3                h516909a_0    conda-forge
xz                        5.2.4                h14c3975_4  
yaml                      0.2.2                h516909a_1    conda-forge
zeromq                    4.3.2                he1b5a44_2    conda-forge
zict                      1.0.0                      py_0    conda-forge
zipp                      3.0.0                      py_0    conda-forge
zlib                      1.2.11               h7b6447c_3  
zstd                      1.4.4                h3b9ef0a_1    conda-forge
JiaweiZhuang commented 4 years ago

Should be same as https://github.com/JiaweiZhuang/xESMF/issues/47#issuecomment-582421822

tyfolino commented 4 years ago

Awesome, totally fixed it. Didn't find that earlier. Thanks!