Open PabloCaceresRefusta opened 1 year ago
Hi Jiaxin!
I performed the transcript count using the STAR and RSEM workflow , which gives me the expected count, TPM and FPKM. Does this imput work for running ASEP?
Also I have 85 samples, should I merge them into one file or does ASEP accept multiple files?
Thank you very much in advance!
This is an example of the input format:
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct ENSSSAT00000000040 ENSSSAG00000000040 3759 3506.32 43.50 0.71 0.51 14.00 ENSSSAT00000158143 ENSSSAG00000000040 3150 2897.32 84.93 1.68 1.20 33.08
Hi Jiaxin!
I performed the transcript count using the STAR and RSEM workflow , which gives me the expected count, TPM and FPKM. Does this imput work for running ASEP?
Also I have 85 samples, should I merge them into one file or does ASEP accept multiple files?
Thank you very much in advance!
This is an example of the input format:
transcript_id gene_id length effective_length expected_count TPM FPKM IsoPct ENSSSAT00000000040 ENSSSAG00000000040 3759 3506.32 43.50 0.71 0.51 14.00 ENSSSAT00000158143 ENSSSAG00000000040 3150 2897.32 84.93 1.68 1.20 33.08