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Jiaxin-Fan / ASEP

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input data #3

Open afcmalone opened 3 years ago

afcmalone commented 3 years ago

Hi, I read with great interested your paper on ASEP. Could you share code that you used to get your RNA-sequence data into an ASEP input data.frame/format? yours, Andrew

Jiaxin-Fan commented 3 years ago

Hi,

Sorry I don't have the code for raw RNA-seq data processing. But the basic idea is that you use ANNOVAR to annotate the allelic reads, count the reference and alternative allele expression for each locus and output that number in txt format.

Hope that helps!

Jiaxin