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Jiaxin-Fan / ASEP

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Two Conditions Analysis text output #6

Open alfonsosaera opened 3 years ago

alfonsosaera commented 3 years ago

Hi Jiaxin,

I have some questions regarding the text output

When I run a single gene test with save_out=FALSE I get the following.

               gene p-value
[1,] "MS.gene27261" "0.857"

However when I run the same code with save_out=TRUE and name_out="results.txt" the file has the following content

gene
p-value
MS.gene27261
1.93295048445907
0.86

I have 2 questions.

1.- What is that extra number? Why was 0.857 rounded to 0.86?

2.- Is there a way of getting the text file in tabular format? That way it would be easier to parse for further analysis or to import to excel, for example.

Thanks,

Alfonso

chanibravo commented 3 years ago

I have the same issue as Alfonso, except I'm only doing one-condition analysis. I would also like to know what the extra number is.

Alfonso I have written a basic R script to read in, transpose, and merge all the output files into one results file--feel free to email me and I'd be happy to share! ch2um at virginia .edu

Jiaxin-Fan commented 3 years ago

Hi Alfonso and Chani,

I've modified the old version of ASEP and the output result will be in tabular format this time. As for the rounding, I did not come across with similar problem. If you want, you can share with me an example dataset and I can help figure out what's happening. I guess maybe R somehow did automatically rounding?

Best, Jiaxin