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Jiaxin-Fan / MuSiC2

cell type deconvolution for multi-condition bulk RNA-seq data
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unable to install MuSiC2 /or update MuSiC to v1.0.0 #3

Open xcliu-oc opened 1 year ago

xcliu-oc commented 1 year ago

Firstly, thank you for developing such great packages.

I tried to install MuSiC_v1.0.0 by using the code from tutorial. devtools::install_github('xuranw/MuSiC') but it still download and install v0.2.0

I also tried to install MuSiC2, but it giving me error message as below: Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called 'xbioc' Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package 'MuSiC2'

the package xbioc seems like no longer available, if I'm referring the correct package (showing https://github.com/renozao/xbioc/issues/1).

please advise. Thank you.

ajandria commented 1 year ago

Try installing it first:

install.packages("remotes") remotes::install_github("renozao/xbioc")