scTE analysis Bulk RNA-seq data

JiekaiLab / scTE

MIT License

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scTE analysis Bulk RNA-seq data #10

Closed akui113 closed 2 years ago

akui113 commented 3 years ago

hello, JiekaiLab team A grateful software for us to research TE. We can see scTE can be used to quantitate TEs reads base on Bulk RNA-seq data with the setting -CB False -UMI False. My question is if the scTE output value needs to correct with EDASeq software?

Thank you very much!

Kui Duan

jphe commented 3 years ago

scTE outputs the raw counts, it need to be normalized by EDASeq or DESeq2 etc.