error kindly help

[amitpande74]

(base) apande@cl-izsvak01:~/Downloads/scTE$ scTE_build -g hg38

Namespace(tefile=None, genefile=None, mode='exclusive', out=None, genome='hg38', info=<function info at 0x7f3ef3e77a60>) INFO : Building the scTE genome annotation index... 2023-05-02 13:46:44 --2023-05-02 13:46:44-- ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_30/gencode.v30.annotation.gtf.gz => ‘gencode.v30.annotation.gtf.gz’ Resolving ftp.ebi.ac.uk (ftp.ebi.ac.uk)... 193.62.193.138 Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... failed: Connection timed out. Retrying.

--2023-05-02 13:46:50-- ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_30/gencode.v30.annotation.gtf.gz (try: 2) => ‘gencode.v30.annotation.gtf.gz’ Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... failed: Connection timed out. Retrying.

--2023-05-02 13:46:57-- ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_30/gencode.v30.annotation.gtf.gz (try: 3) => ‘gencode.v30.annotation.gtf.gz’ Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... failed: Connection timed out. Retrying. kindly help

[rpisalive]

@amitpande74 It happened to me once previously but then later it works when I tried again. The problem is probably due to the problem of their server. I just tried again and it works for me.

[jphe]

@amitpande74 If using the default parameters to build a reference with scTE, the server must be connected to the internet. Based on your question, it appears that there may be an issue with accessing the network.