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JiekaiLab / scTE

MIT License
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scTE cannot run due to a lack of "=" #65

Open rpisalive opened 11 months ago

rpisalive commented 11 months ago

Hello,

I ran scTE recently but it stopped and showed an error indicating that there is a lack of "=" on line 156 of the scTE file in bin: if args.hdf5 = True:

Hope it helps.

jphe commented 11 months ago

Can you provide more details about the command do you use?

rpisalive commented 11 months ago

@jphe The command I ran was scTE -p {threads} -i {input.bam} -o {output_name} -x {input.index} --hdf5 True -CB CB -UMI UB Sorry, I did not save the error message but the error message told me that there might be a missing '=' on line 156. After adding back a '=' to line 156, it ran with no problem.