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JiekaiLab / scTE

MIT License
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reference hg19 #7

Closed xyn0813 closed 2 years ago

xyn0813 commented 3 years ago

I have established a custom reference for hg19.but when I use scTE command, I can only choose -g hg38. Does this situation make a difference for my outputs ?

jphe commented 3 years ago

The -g option is not needed for custom reference

xyn0813 commented 3 years ago

but -g option is needed for scTE command here is my parameters; I use the hg19 reference , but I have to choose hg38 ![Uploading image.png…]()

jphe commented 3 years ago

I can not see you code, you need povide the bed/gtf file for hg19 reference, and the -g parameter no needed.

https://github.com/JiekaiLab/scTE/issues/3