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JihedC / Snakemake_ATAC_2020

Repository for Jianhui's snakemake pipeline
MIT License
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Add MultiQC #5

Closed JihedC closed 3 years ago

JihedC commented 3 years ago

https://github.com/ewels/MultiQC

WJH58 commented 3 years ago

@JihedC I have added rule multiQC. It produced a QC summary across all samples after trimming and stored the results in results/trimmed_fastqc.

WJH58 commented 3 years ago

@JihedC I changed the command line to multiqc . 2>{log}. So it searched the whole ATAC-seq_pipeline and produced the results in this folder. this is the screenshot of html report:

Screenshot 2021-02-24 at 16 00 35
JihedC commented 3 years ago

Can you upload the multiQC html reports and the folder associated with it on Idrive?

WJH58 commented 3 years ago

@JihedC I added them in /Jianhui/Morc3_ATAC/output/multiQC