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JinfengChen / cdhit

Automatically exported from code.google.com/p/cdhit
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threads issue in openmp(-T) #19

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1.Hi, i am installing cd-hit with openmp=yes option for nucleotide sequence 
clustering. it seems, it compile properly and run Ok but when i am using -T 
option for threads. it gives error!!

Program: CD-HIT, V4.6 (+OpenMP), Apr 25 2014, 16:47:37
Command: ./cd-hit-est -i GH48.fasta -o sandeep -c 0.9 -n 10 -M
         2000 -T 2

Started: Fri Apr 25 16:50:02 2014
================================================================
                            Output                              
----------------------------------------------------------------
total seq: 464
longest and shortest : 2970010 and 396
Total letters: 6460438
Sequences have been sorted
Segmentation fault

What is the expected output? What do you see instead?

i am expecting thread option should work and use number of cpus

What version of the product are you using? On what operating system?
CD-HIT, V4.6

Please provide any additional information below.

plz help me out

Original issue reported on code.google.com by sonubioi...@gmail.com on 25 Apr 2014 at 2:58