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JinghaoLu / MIN1PIPE

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
GNU General Public License v3.0
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Cell detection in Min1pipe #34

Closed akatav closed 4 years ago

akatav commented 4 years ago

HI, So, below is a sample gif from one of the sessions recorded from mouse brain.There are no visible neurons as can be seen. But Min1pipe detects 100+ cells in this data.I'd like to know how min1pipe detects these many neurons in this dataset.Does min1pipe return a default number of neurons for a given brain region by any chance?Kindly explain. test1

JinghaoLu commented 4 years ago

The answer to your question is no. BTW, your video provoked, so you'd better ask the video for an explanation. Good luck!

akatav commented 4 years ago

@JinghaoLu sorry about that.i agree that i did not give much info about the video itself although i am not sure what is provocative about it.it is a sample gif from one of our sessions recorded from mouse brain.

JinghaoLu commented 4 years ago

Anyway. Feel free to share the parameters you used so that I can see what is going on, if you still have interest.