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JinghaoLu / MIN1PIPE

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
GNU General Public License v3.0
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Wrong Contours #39

Open marcoistasy opened 4 years ago

marcoistasy commented 4 years ago

I am running into an issue with this library: the code is running to completion without any up errors and outputting the three files (frame_all.mat, reg.mat, and processed.mat). However, when I take a look at the identified contours, they don't match on to any neurones; it almost seems to be that the programme is selecting the ROIs at random.

I have tried tweaking the available parameters, particularly se to no avail; with any iteration, the code runs to completion but outputs the wrong contours. Are there any other parameters, whether high- or low-level, that I should change to receive better contours?

I understand that this is a localised issue and will most likely require that I share the files I am analysing and I am happy to do that.

JinghaoLu commented 4 years ago

@marcoistasy Pretty strange. Yes I would like to take a look of the video.

marcoistasy commented 4 years ago

@marcoistasy Pretty strange. Yes I would like to take a look of the video.

Thank you for your quick response! How should I share it with you?

JinghaoLu commented 4 years ago

@marcoistasy to min1pipe2018@gmail.com, like what you did last time. Thanks!