JinghaoLu / MIN1PIPE

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
GNU General Public License v3.0
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Can't click manual seed selection #4

Closed jtalley24 closed 5 years ago

jtalley24 commented 6 years ago

Hi, I am trying to use manual seed selection. Everything looks good, and after figure 1 pop up, I thought every click has to make red dot, but click doesn't do anything. I tried drag, right click, middle click. How can I fix this issue?

JinghaoLu commented 6 years ago

Hi, The correct codes have been uploaded. Thanks for pointing out the problem. J

jtalley24 commented 6 years ago

@JinghaoLu That's a great help! Thanks! I worked really well!

lumin223 commented 6 years ago

@JinghaoLu Hey, Thanks for sharing this awesome code. I am gladly using this. I am just reporting an issue. It's not a major flaw. After running multiple video analysis (for example, msCam1.avi, msCam2.avi... msCamX.avi), result files were generated in name of 'msCam_data_processed.mat, msCam_frame_all..). And at the last step (real neuron selection), the code only look for 'msCam1_data_processed' which is not generated by multiple video analysis. It makes all the analysis re-do because the code couldn't find 'msCam1_data_processed.mat' file. (msCam_data_processed were generated.) But it's not the major issue because there is already processed the file, so I can open manually.

JinghaoLu commented 6 years ago

@lumin223 Hi thanks for your interest in the code. As for the usage of "real_neuron_select", actually it does not automatically search for any .mat file. If you run it through the demo_min1pipe, a window pops up asking the user to select the file they want to inspect. From here you can choose the file "msCam_data_processed.mat". Is it possible that you point out the line and the file that contains this issue? Thanks for your effort. J

JinghaoLu commented 6 years ago

@jtalley24 The traces you click on are the bad ones, or false positive you think. For reference, jump to Usage -> Manual Options -> real_neuron_select. The third bullet point is about this.

jtalley24 commented 6 years ago

@JinghaoLu omg;; thanks a lot! I shouldve look more carefully