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JinghaoLu / MIN1PIPE

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
GNU General Public License v3.0
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Error after neural enhancing #52

Closed Mtkostecki closed 3 years ago

Mtkostecki commented 3 years ago

Hi!

I have met an error after a neural enhancing step, what may be a cause?

Done noise suppression, time 106.348 No GPU Device available. Insufficient number of outputs from right hand side of equal sign to satisfy assignment.

Error in dominant_patch (line 16) bb = bb.BoundingBox;

Error in frame_reg (line 53) mskpre = dominant_patch(imaxn, dthres);

Error in min1pipe (line 108) [m, corr_score, raw_score, scl, imaxy] = frame_reg(m, imaxy1, se, Fsi_new, pixs, scl, sigma_x, sigma_f, sigma_d);

Error in demo_min1pipe (line 14) [fname, frawname, fregname] = min1pipe(Fsi, Fsi_new, spatialr, se, ismc, flag);

JinghaoLu commented 3 years ago

Hi, it seems likely that the algorithm did not successfully find a patch that contains the neural info there. Could you mind sending the max projection figure after neural enhancing for example? You can send it to min1pipe2018@gmail.com.

Mtkostecki commented 3 years ago

I have fixed that - it turned out that my first two tif files were broken for some reason.